RNA id: TU125697


Basic Information

Item Value
RNA id TU125697
length 2822
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G100641
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22446374 ~ 22449216 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agTCTATAAAATTGCCAAATACATTAAGGATCACAGAAGACAAACCAACGAACAGACAATAACAAACATTCATATTTGAACTAATTTAAATGCTGATctgtaaaaagaaataaaatattatgtacAAATGGACAgataaacacactcacacacacagctatccACAAAACACAGAATGTGGTCACATGGCACCAAATATTAACATACCTCACAagtgcttctgttttttgttttctttttaattaatattaactgaatgtaataaaaaaaatattaacatttaaacactgtttacaatataatgaaaatcCATATCATactaaatataacaatatttaccAACACACTTTATTTATACTAAATCTCTATtctgaaatataacaaaaatagcacttaaaataatatttattattacatcaccaacaacagcaacagcgaacatcaacaacaaaaataataacataataataataataataataataataataataataataataggttattagaaaaacaaaacaatacaaatatgttacTCTATTACTCGCTAAAATGGGTCCGAAAGCCTCCTCACCCACAGTTCTTTGCTCTCAAGCCCACAAATGTATTTCCCAGCAAAAATATCTAATCTCACTTCCCCTTGGAAACCACTGTAGCAATTTCAAAAATTCTGTATGTGAAAACTGTACAAGAGGAGCAGCAGaggaatgtgttttgaaatgcaacGTTGTCAGTGGTGTTCATCTCGGATTTGACTTTCACTCTAAGCATTGACTTTCTGCAAACATGGAACCATTTAAACCCCAACACTTTTCTGCTCCATCTCACAGAAGGCACCATGCTTCCAGGGATACATGTATTCTTCTGTTTTGTCCTGTTAAATATGACCTGGTTGGAGTTTTCAAAGTAATTAATCAATATCTAGCTCTTgcgtcatatatatatatatatatatatatatgatgtcaCTGTTTGTGAGTCCATTCTCTTGATTGTAAAATACCTCGTTTTGAGagacacattttgaaattaaatggttACGTACGTGCCGTGTGGgatttaaacatgttactgaAGCTCCTGGGGCTGTTTTCACAAAAcctgattagcactagtcttctacaatattatttttgttccaaAACTAtagctaatcaaggtctgtttGAATACGTTTAGATTATGGTGCTGAAGTATGTAAAACTTTACAAACACACTGTTATAAACAAAGGTTTTAAACAACAGGAGTCATCTGTCTTCATAAATCCCCATACTGAATTATAAAGATCAAGTAAAAAGTTTTAGAAGGGCAGTCCATGGAAACAAGTTCAAAGAAtttcaagaaaattaaaaatatttgttaaaatattggATAAACCTTTCAgggttttaaagaaaacatataatGTTTAATGAACCTTAATAGGACATTAAGACATAGTTGTCTCTAAATTGTTTACATTGATCCTGTCTCCTCACATTAATTCACAAATTCGTCATTCACTGCACCCTGACTTTTCTTAAGACATAGCTTAATTAGGAATTCTATCGGTCTCTTGCTGTCAGTGAAAGAGATCATCTTAGTGCTAATTGGCATTGTGTTTGTCAAGTTCAGCAGAGAGGAAAAACTGTATATTacactgtatctgtatctgtctaGTCCCACTGagagaaaagtgaaaaaataaacattactgaaaggtttaaattgtttaaatcacagctctttgaacattttcactcagTTTCGATGCAAATAAAACTGTATCAATGGCTCTGTTCTCAGAttcatttaatctgttttgtttatatttattataatgatgtatgagtttgtaatttacagtatgaaataagaatgaaaaaggTGTTTATGTGGTCTAGGTGTCATATATGCTTTGGGTTCTTGCAGTGTTCATGGATGACTAGAGAAACAGGCCAATTTCACACTAAATTTCAACGAAACTGTGAGTAAATGATGCAGACCGCAGTCGTTTTACCAAACTGCTTCCATTAATCGACAGATACATAATCCTTGATGGTATCTTAGCAGCAGTTACAAAGCAGATAAAAATATTCTTTacatactaaaacaaaacaaaacaacaacaaaattcaGACAAGAATTACCTGCACACACCCCACCCTGATTTGATTTTCTCTCATTGCTCTCTCATTTTACTTGATATCCTCCTGAATAATGTTCTCTTCTTCTTGACAAACCAGCCTTGAATTACAATTAAACCAGGGCCATATTACTTAAATAACTAGTGATTAACCCCAATATGtctgttagtattattattattatttaactattattattatcatgggTAGCATAGTATGGTTTCAAACTAGAATGATACCACTGATCTAATGAACTATAAATCAAGGGAGTAGTAAGATGCATATTCAAGCAGAATATGTCAACAAGGTCTTTATGGCATTGCTTCAGCAGTGTATTGGCATGAGTCCCCTTTTAAAAATGCGGTTGACAATGGATAAGAATTGCCTCCCTTGCATTTTGGCATTATCTCCTTCCCCCAACGGTTtcatataatttgtaatttgaacCAACTGGGACTGATGGAAATGGGGGATTGGTGCATAATCTCGCAAAGTCATTACTGATGTAAAGGTTATGGAAATGTCTGAAAAATTACTGGACTTTTGTGGAGTTACAGATTGTTCACATTATCTCTTACccttaaaaatcataaaacacaaGGAATTTTGAATATGTggttgaaaaaactaaaaactgcaGATGTACAGTTCTTAAAATCTTTAAttgttaaactgaaaaacaatgcatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125695 lncRNA upstream 157526 22288623 ~ 22288848 (+) True G100639
TU125610 lncRNA upstream 631659 21814371 ~ 21814715 (+) True G100568
TU125542 lncRNA upstream 1135769 21306606 ~ 21310605 (+) True G100507
TU125537 lncRNA upstream 1380989 21064050 ~ 21065385 (+) True G100502
TU125516 lncRNA upstream 1617760 20828328 ~ 20828614 (+) True G100483
TU125775 lncRNA downstream 371285 22820501 ~ 22820703 (+) True G100707
TU125778 lncRNA downstream 386038 22835254 ~ 22923396 (+) True G100709
TU125866 lncRNA downstream 766835 23216051 ~ 23218316 (+) True G100776
TU125896 lncRNA downstream 834475 23283691 ~ 23284077 (+) True G100801
TU125958 lncRNA downstream 1313075 23762291 ~ 23762523 (+) True G100858
AMCG00015788 mRNA upstream 268117 22166231 ~ 22178257 (+) True AMCG00015788
AMCG00015787 mRNA upstream 300303 22103118 ~ 22146071 (+) True AMCG00015787
AMCG00015786 mRNA upstream 381015 22045949 ~ 22065359 (+) True AMCG00015786
AMCG00015782 mRNA upstream 1216719 21227280 ~ 21229655 (+) True AMCG00015782
AMCG00015781 mRNA upstream 1221795 21157154 ~ 21224579 (+) True AMCG00015781
AMCG00015795 mRNA downstream 211845 22661061 ~ 22664968 (+) True AMCG00015795
AMCG00015796 mRNA downstream 229621 22678837 ~ 22683895 (+) True AMCG00015796
AMCG00015797 mRNA downstream 257972 22707188 ~ 22715143 (+) True AMCG00015797
AMCG00015794 mRNA downstream 308919 22758135 ~ 22767486 (+) True AMCG00015794
AMCG00015801 mRNA downstream 401588 22850804 ~ 22874803 (+) True AMCG00015801
TU125356 other upstream 2178089 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 3674408 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 4120470 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 5314625 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 6314987 16131044 ~ 16131387 (+) True G99624
TU125724 other downstream 230994 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 2415873 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 3814699 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 3923937 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 5441336 27890552 ~ 27992014 (+) False G101400

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065970 False 3869 mRNA 0.42 6 NC_007118.7 25323742 ~ 25348597 (+)