RNA id: TU126009


Basic Information

Item Value
RNA id TU126009
length 584
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G100903
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 24070826 ~ 24156851 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACATGGAGAGTCTGACTGGGACTCTGGAAGTGGCCTCAGTATCGAAGAAGATATGTACATGGTCACTTCCcacttcctttgttttgtttatcagcTCTCTCCATAACTAGGGCAGACAAATAAACCTAAAAGCCCTACAGAATCAATAATACCCAATATTCAAGATTGCAGTAGCTTCGCCAAGCTCTACCCAAAAAAGAAGTACctgatgcattgttttgtttttatttaaggaaTTCCTGGGCAAAAGGGAGAAAAAGGAGAAAGTGGCATCCAAGaCTTACACAGTCTTACTGTAAATTCAACACTGAATAATTCAACcgaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacctggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacatgcacccggggacacaaatggaaattgggcttcaaggcattcaaaatggaaaacaggagacacttct

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125964 lncRNA upstream 109189 23839798 ~ 23961637 (+) True G100863
TU125958 lncRNA upstream 308303 23762291 ~ 23762523 (+) True G100858
TU125896 lncRNA upstream 786749 23283691 ~ 23284077 (+) True G100801
TU125866 lncRNA upstream 852510 23216051 ~ 23218316 (+) True G100776
TU125778 lncRNA upstream 1147430 22835254 ~ 22923396 (+) True G100709
TU126087 lncRNA downstream 327978 24484829 ~ 24549300 (+) True G100956
TU126093 lncRNA downstream 371909 24528760 ~ 24537309 (+) True G100962
TU126086 lncRNA downstream 386634 24543485 ~ 24549300 (+) False G100956
TU126137 lncRNA downstream 439623 24596474 ~ 24597817 (+) True G100998
TU126169 lncRNA downstream 446451 24603302 ~ 24608554 (+) True G101029
AMCG00015830 mRNA upstream 72817 23989239 ~ 23998009 (+) True AMCG00015830
AMCG00015829 mRNA upstream 310200 23747430 ~ 23760626 (+) True AMCG00015829
AMCG00015822 mRNA upstream 337146 23713609 ~ 23733680 (+) True AMCG00015822
AMCG00015824 mRNA upstream 599123 23460327 ~ 23471703 (+) True AMCG00015824
AMCG00015823 mRNA upstream 616930 23413178 ~ 23453896 (+) True AMCG00015823
AMCG00015833 mRNA downstream 80969 24237820 ~ 24265831 (+) True AMCG00015833
AMCG00015834 mRNA downstream 133518 24290369 ~ 24306093 (+) True AMCG00015834
AMCG00015835 mRNA downstream 188773 24345624 ~ 24353418 (+) True AMCG00015835
AMCG00015837 mRNA downstream 258273 24415124 ~ 24439833 (+) True AMCG00015837
AMCG00015836 mRNA downstream 285786 24442637 ~ 24452889 (+) True AMCG00015836
TU125724 other upstream 1390053 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 3802541 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 5298860 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 5744922 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 6939077 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 708238 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 2107064 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 2216302 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 3733701 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 4420649 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile