RNA id: TU126086


Basic Information

Item Value
RNA id TU126086
length 2044
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id G100956
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 24484829 ~ 24549300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGGATGAATGACCTTTAAGTttttattaacatgttttaatgtgagTAAGTGCAACATTTTTGCAAGTCATTAAAAGTGAATATGCGTAAAGCAGGAGGTTATATGTTGTTTCGATCATTGTTATAAGAATAATatcaccttttctttatttaaagcagAGGATATTTTGACTTGCCCCATTACTGGTTGTAGTCAACTCACATAGATCAACAGGTGGATCATTTCATGTTCTGAAGTCCCCAAATCGAACAGAAATTATATTGAGCtcaatctctctgtctctcatttGCTGTCATTCACATCTAGTAACTTCCACCAGTGCTCAGTTAAGCTTAACTGTTAAGGGTGGATACATTAAACAAGAAGGGAACATTTTCAGATAATGTTCATACTGTCTCAGCtgtcttaaattaaaatcatgtcAATAAAGCCAAGGAACAAGAACAATTTCCTTCCACGTTTTCGTAGCTTTAAAGCTCtaaatttacttttgtttttggatgTTGGGGGCACAAATTAGGGGATATTTTGCTCTGTATTTGGAATAAACCCTTGGGCTAAAGGACATCACAATGATTAAATAGGAAGCTACTATGTAGGCCTAAACTCCATTTCTTTTTAGAGCACAAGTTTATCTAATATGAAGCTGGAGGATGTAAAAGAATATATCATGAGTTTTTTGTTTGGCAATACAAGGTCAGGAGCTGTGGAAAGCTTCCAGACAGGCTACACTCAGATGCACACTTCACCCTATTAAGTAGGGCTCATTTCTTACATTTACTGGttgaaaacacaaagtaaaaacTATCATAGCTGCCCAGCAACCCAATAGTCTTATACTAAATGAGAGCTGTGAACTCTGGTAAGATGCCATTTTCTGGTTTCTGCTGTAAATCTCTCAAACACTGAATTCTACTTAGATTACCTGTAGGCAGTTTGCTAAGCAAATATTGGTTTTGGATGTGTTaagctttattaaaaatattttgaaaggcagacataataaagaaaagaagatAATATTGAACAAAGAACAGCcggaaacattaaaataatgtgttgttcACAAAGACTGAATGACACATTTTAACTGCATCACAATCCatcaaaacaagaaagaaaatgtaaataacatgtTCATGACTTGCGACTATATGATAAAAGGCTATTCCTTCTCTAAACACTAGACAATATTTGGTTCAAAATCTGCAGGCCTGATCTTCATCACAACGTTTTTAATGGAGTACCACCATCCATGCCATGTGTACCAAACAATCCCATTGTCAGTCTTTCCAGTGTAGGGCCCCTGGTAGTAAAAGCCATTCAGGTTGGCAGAGTGACATTGTTAAACCACCAGCCACCCTTGTCCTCTTTGGCACAGTTTCCCTCAAAGCGGTCATTATCTCTGTCATAGGTACTAAATTTCATCCCATTGTGACTGGCCCACCACTGCACCTCCGGGTGGTAGCTGCCCGCAAGAGAGTCTCCTGCTGTCCCAGAGAATTTCCCAAAACTGAGCTGATACGCACTCTGAAGAAGGcCTGTTCATCTCCAACTTGAAACTTCTCATAGTTGGCAACACGTTGTTCTCCATCAAAGTCTCCCAAATTAACCCTCAAATCGTAACTTCCTTGTGAGGTTAAGTAATGGAGATTGTCATTGCCTAACCAAAATTCTCCATTGGAAGACTGCATATTCCCAAAGCCATTCTTGTAGAAAGACCATGCCCTTTCGAATGTCTCACTACCATCAGATCGTCTCTGAATGACAGTCCAGCCTCCCCCATCACTCATGTCACAGTAAACCTGGAATTCAGTGGGAGAGTCAAGGGGCCTTATCCTGTAGACTCCACTCCTCATATTCCCGTCATTATATGCCTGTGCACAGTCTGAACAAAGTCAGGAGAAAACTCTGTCAATGTAAAAAATACTTCAACAGAACcttacataaaaatatacaaatttcATCATTACAGTTTTcagacattaacattttcaaattttggTGGAAGCATATTTGAGACAAGAtcaaatctgaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126093 lncRNA upstream 6176 24528760 ~ 24537309 (+) True G100962
TU126009 lncRNA upstream 386634 24070826 ~ 24156851 (+) True G100903
TU125964 lncRNA upstream 581848 23839798 ~ 23961637 (+) True G100863
TU125958 lncRNA upstream 780962 23762291 ~ 23762523 (+) True G100858
TU125896 lncRNA upstream 1259408 23283691 ~ 23284077 (+) True G100801
TU126137 lncRNA downstream 47174 24596474 ~ 24597817 (+) True G100998
TU126169 lncRNA downstream 54002 24603302 ~ 24608554 (+) True G101029
TU126213 lncRNA downstream 561498 25110798 ~ 25111058 (+) True G101069
TU126237 lncRNA downstream 838761 25388061 ~ 25408536 (+) True G101087
TU126239 lncRNA downstream 859365 25408665 ~ 25409649 (+) True G101088
AMCG00015836 mRNA upstream 90596 24442637 ~ 24452889 (+) True AMCG00015836
AMCG00015837 mRNA upstream 103652 24415124 ~ 24439833 (+) True AMCG00015837
AMCG00015835 mRNA upstream 190067 24345624 ~ 24353418 (+) True AMCG00015835
AMCG00015834 mRNA upstream 237392 24290369 ~ 24306093 (+) True AMCG00015834
AMCG00015833 mRNA upstream 277654 24237820 ~ 24265831 (+) True AMCG00015833
AMCG00015842 mRNA downstream 9825 24559125 ~ 24594041 (+) True AMCG00015842
AMCG00015846 mRNA downstream 784716 25334016 ~ 25337276 (+) True AMCG00015846
AMCG00015845 mRNA downstream 824615 25373915 ~ 25405589 (+) True AMCG00015845
AMCG00015847 mRNA downstream 1404059 25953359 ~ 25997861 (+) True AMCG00015847
AMCG00015849 mRNA downstream 1469391 26018691 ~ 26030507 (+) True AMCG00015849
TU125724 other upstream 1862712 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 4275200 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 5771519 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 6217581 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 7411736 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 315789 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 1714615 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 1823853 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 3341252 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 4028200 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile