RNA id: TU126137



Basic Information


Item Value
RNA id TU126137
length 840
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G100998
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 24596474 ~ 24597817 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGAGGATCCACTCGAGAATGCCGATGTATCCCCCATCCAGGCTGAAGCGTTCATTCATAGTAAGTGTGAATAAACTTGGTTTGATGCCCGTTAACATGCCAACATATCCTGCAAAATTGGTCGACTTGAAAACAGTCTTCTTGTTCCTTTGAAAGTCTAAGTTCACAACAAGTGGTCTCAGCCTTTCGGTTACTAGCCAGGTTTTATTCTTGATGTCCCACCTGATATTAAAcaatggttatatatatatataaaaatacaaataaaaaattacatattacatacaaatgcactgaactaaaaaacaagatttaaacTGACaccttttaaaagtgaaaactgCAAGTTGGAGGTTCTAACACATATGAAGCTGTATATGGGATGTACAGtccttttaaatcatttaaacatttgtcaAAAGACATTTGGAAATTCCATTTTTATCCATTGctatttcatattcattaatgtataaCAAGATTTCAGCTGAAGTAGGAAAGACCTAGAATTGAATGTGCTTTCTAAAAAGCATCCAGCTCAGTAATATACCAGGACTAACTCCAGactacaccaccaccacaggCCTGAAATTGCTCTACAACTCTATTTTCACTTTGTTAGGAAAAGGAGGTTTAAGTTACACATATAACAAAAGCTAAAAGATAAGCAGTGTTTCTAATGATTGggattggtattattattagacaACGTCATCCTTTAAGTCATGCCAGCTATGGAACTGCAGAATATACTTGCCCAAGGAATAATCCAAAATCTAAATTCCGTCCATGATACAATTTGCCTaaagaaagacaagaaacaAAGTCGCCTGAATATTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126087 lncRNA upstream 47174 24484829 ~ 24549300 (+) True G100956
TU126086 lncRNA upstream 47174 24543485 ~ 24549300 (+) False G100956
TU126093 lncRNA upstream 59165 24528760 ~ 24537309 (+) True G100962
TU126009 lncRNA upstream 439623 24070826 ~ 24156851 (+) True G100903
TU125964 lncRNA upstream 634837 23839798 ~ 23961637 (+) True G100863
TU126169 lncRNA downstream 5485 24603302 ~ 24608554 (+) True G101029
TU126213 lncRNA downstream 512981 25110798 ~ 25111058 (+) True G101069
TU126237 lncRNA downstream 790244 25388061 ~ 25408536 (+) True G101087
TU126239 lncRNA downstream 810848 25408665 ~ 25409649 (+) True G101088
TU126264 lncRNA downstream 823073 25420890 ~ 25495919 (+) True G101107
AMCG00015842 mRNA upstream 2433 24559125 ~ 24594041 (+) True AMCG00015842
AMCG00015836 mRNA upstream 143585 24442637 ~ 24452889 (+) True AMCG00015836
AMCG00015837 mRNA upstream 156641 24415124 ~ 24439833 (+) True AMCG00015837
AMCG00015835 mRNA upstream 243056 24345624 ~ 24353418 (+) True AMCG00015835
AMCG00015834 mRNA upstream 290381 24290369 ~ 24306093 (+) True AMCG00015834
AMCG00015846 mRNA downstream 736199 25334016 ~ 25337276 (+) True AMCG00015846
AMCG00015845 mRNA downstream 776098 25373915 ~ 25405589 (+) True AMCG00015845
AMCG00015847 mRNA downstream 1355542 25953359 ~ 25997861 (+) True AMCG00015847
AMCG00015849 mRNA downstream 1420874 26018691 ~ 26030507 (+) True AMCG00015849
AMCG00015850 mRNA downstream 1440531 26038348 ~ 26040669 (+) True AMCG00015850
TU125724 other upstream 1915701 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 4328189 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 5824508 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 6270570 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 7464725 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 267272 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 1666098 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 1775336 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 3292735 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 3979683 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile