RNA id: TU126474


Basic Information

Item Value
RNA id TU126474
length 4507
RNA type TUCP
GC content 0.46
exon number 3
gene id G101275
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26373153 ~ 26377699 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGCAGCGGGAAGAATAAATCCATATAATAGGAAGCAAGAAGGTTTGGCTAGATTTAGGTGAGACAAACACTACAGGTAAAACTGCTCTAtgtaaaaacatactttttttttaataggcaGCATTTAAACACACCAAAACAGTTCACACAGTcacaaaaagacaagaaaaggtTTCTTAGATACATGCTTGATCTAGCAAATTAATTACATAGGAACAggtcttctgttttgtttctggtttttgagtttgtgattttgttttattttctgttttacattttggaacaatgtttttttcagcagcaaagacaaaaaataaaataaaatagaaaataaaacaaacaaacaaaccaaaaaatgcaCACGCTTTGGAGCCAGTTCTTTTGCAGCTCCTTCTTTAACTCATTGATCTTAGAACAGACAAAAGCCATGACACAATATAAGCCACACAAGACTCAAAGCATCTGCTGAGGCTTATATCCGCACAAGAATggctttaattaattttaccTGATGGGTGGATCACAGAGATCTAGGGTGCTTTTGTAACACGGGCATTCACAATGTGTGTTATTCCCCCCCTGGCCACCCCACTAATTTAAACCCAAAAATCAACCAGAACACCCAATTGTTTATAGATATTCTTATATTTCTGGTGCTTTTTAGTTAAATGCCTGTTGTGGAAGTTTTCTTGCAACAGCACAAAAAGGAGCAGGTTGGCTTTGTTTTGTGCTGCGTGTGGCTGGAAAGAGCTGAGGAGGCACTCTCAATGTTGGGTGAACACCAACCCTATGTTGCATAGTGGGaaccaaaggaaaaacaaaacaaaacaaaactattaatCCATGAATCtgtatacacatgtatgtatgtttcgGTCAATTCACTTAATGCATGTGACATgatcaaacaaaatgtgtttctttgtggCGTAATTTTTAAGATTTGACCCTTATAGATTTCCAACATGCCCTCGTTATCCCTCTAGATCCATGCCTTCCAACGCATTGAGCTTGATCGTGTCATatgcacacacccacacatccacatttcaaaacatatacatacatacattcatacatacatacacagtgcaTATATATTCGAAAGATTGTGAGTGTCTTGCAATGGTAGCACCaagaaatgcagtttaaatgaCAAGGAAAAGTAAttcctttttaatcttttgttttcagttacaaattCATGATCACCAGCtggttttgaattttaaaatgactgaacaAGAATTATCAacgttattgttttttaaaaactgataGACACGGGGAGACGTAAAACTAAGACATATTTTACTCTCCGGATGAAACAACTATAATTCTGtcatttagtttatttcaatgtgttGTGAGATGATATATTAGATGCTATGGCAGTAAGTAGTTAGATAAATCTACTGCCtgtgcagtaaaaaaaaaatggattacAATGCCTtacatataataatgtaaacaaaataaaaaagcagtatCCATACTGAAtactctctctctgtatgtgatAAGACAATGCAACATAGGGGGTTACAAAAAATTTcagtaatacaaaattcaaGGATTTCACTTAGACTTTGACTGTAAGCATATTGTAGAAAAatcctgttttctttgtttttttgatatTCACCAAATTAAACCTGaattccagaaaaaaaagaaaatctgctttaaaaacatttgttatgtGTACATCAATGAAAAGGGTTCATTTTGGAGATACCTGTggaattaatgttattattattggtattaacACAAGttacacacttttgtttttcattaggaAACACAACCAGCGGATTTGACCGCAGTTATTCAAGGGTTAAACAAACAacgatgacaacaacaacaaaacaacttcCAGAATGATCTTTCAATTCAAGGAACAGCGCAGAGCCAGCACATGTAACACAAAGCAGCGCAGTTGCTTAGTACTTCATATCGTCCCTGTAGGAGGACCGCAGCAGCTCCGCAAAACAACCTGAGTTACCTGTTCTTCTGTGTGGgggtgatttttctttttctttttgtgaataTAGTTAACCTTTGAACTGATATTACttgtaaaaaactaaatgaaaacacataTACATCTCATCTATTCATAGAAGCATCCTTTCTAAGCCAGCCActctccacccccccaacaAACTTCTTCTACGTAAACATACTCGACTGTACTCGGCTTACCGTGGAGAGTTAAATCCACTGTCTACTGTAATGCTGCTGCTGTCCATACTGTCAAGTCGGGCGGAATGGGCAGATTTTTGGCTGTTATTGTTGTCGCTTTCCTTTGGGCTCAGGAGGGTGAGGTTCTTCTCGAACTTCCGCTGCAAGTCTCTTTCCTTCTCCCGTTCGAGCAGCCACTGCATGGTTCCCCCACCCTCCCGGGTCTTCTCCTCCTCCGTGTTTTTGTGCGTTCCCTCGTCGGAGTCATCGTCGTCCGACACGTTGTAGTAGTCGAACGAGGGCTCCACCCCGGAGGCCTGGTCTGAGCCCTGCGGAGCCGACGCACCGGGGGAGACGGACAGCAGGCTGGGCTGCTCAAAGTGTTCGCAGTTGCTGAGGACCTCTGCGGATTTCACGTGCTGCGCTTTCCGCAACGTCCCCGATTTCTGGTAGCTGTTTTCTACATAGCCAACAGTCAATGCATTGTGGGGAGGTTTAAACAAAGTGTCCTTGCTAAATATCTCTTTCCTTTTGTCAGCAGCGCCGGGGTCCGCGTTGTTATGTTGGTGCATCAAACGTCCATTTGGTATCGGTTCCGGCGTCTGGCTCGGCACCGGTAAACTCACGCCATTGTGTCCCTTTGTCACGTCCTCTTTATACTCGCAGGACTCCCTGGTGAGGTGTGGGGTCTGCCGGTCTGCCGGAGAGATCTTTTTGACACCATCTGACAAGGTAAGAGTATCGTGATCATTTTTTCCTAGGGGGGAGGGAGCCGTGAGAACAGTTTCGTTGGACGTATTGCACTGAAAGTAATCGTCCGTTGAGGGCTTGGGCGAGCAGGGTTTGAGATCGCTGTAGGACGGTAAACTGTCTCTCATTTTGGACTGTTCCATTGGACTACTACAGACCTTGGAGTCCTCTGGGTTCCCCTTCCCCATGTCAGGCACGCATACCTCAGTGTTGAAGTTAGCAGCAGAAAGCAAGATTCTTTGATAGTGGTGAGCCTGAGAAGGCCTCAATGTACCATCATCGACATAGTAGCGGCCCTGCCCTCTGTCATCAGGGCTGCAGCCTTCGAAGTCCTCCGCTGTCCCAACAGAAGCATCGCCAAGCGGGCCTTTGGAGTTGTCCATCGAGCGAGACCTCTCCTTGGCCTTGCCCGACCTCTCGTTCCGAGATTTCCTGTCCTGGGTGTGGCTGTGGCTGCGGTGGACTTTGGAGTGGGAGGTCCCCCGGGAGGGTTCGGGAAAGGGCATCTCTGTTCTCCTTTTGGCAAGCTCTCCAGACACGTCCCACTCGGGAGTGACCGGGAAGTGTGACTCGACAACGCTGGGGTTGCTGTGCAAAATGAAGTTCTCCCCATTGTGCTCCACAGAGAAGGTGCCGTCGCGCGGAGACCTGACAAGCGAAGCGCTGTAGAAGTCATAATCCCGCTCCCCTGCCAGGTCTAAATGAGAACCCTCCGACGGGTCACCCTTGGATGCCCGGGTCTTACTGTGAGACCGGGATTTGCCGTGGGTTTTCCGATGGCCTCTGCTCCTCTTGCTCCTGGCGCTGTGCTGGGCCGAAGACCCGGCTTTGCTCCTCTGtgccttctcctcctccagcctCTTCATCAGTGCCGTGTGCCTCATGACGTTCTCCACCGTGAGGTCGGGGTTGATGCGGCGGATAATTTCCATCTCCACCTCCCTGGGGATAGTGGTTGGTGTGTCCTCGTCTCGCAGGGGCCACTCCTCCGGGGGGAACTGGGCTGAGAAGGTGGCCAGGTGTTTTGTCTTGTCCTTCTTGAAGCTCAGACGGAAGAGCTTGAGCCCAAATTTCTTGGACTGCTTCTCCCCGCTGCTGCCCCCTTCCTTGTGTTTGGTCAGGGTGTCCGTCTTGTACGAGAAATTCACCGTGCTTTTACTCTTTTCGGTGGCGGCGGCCTGGTACAGGGAAGGAGGGCAGTAGGAGTCTTTATGGTCCTTTGGGGACTTCCTCTGGAGGGTGGAGGCATGAATGCTGTGCATGTCATCACGGTAACAGTTATAGGAGTCGCAGTGGTTTTTGTGGTGGGGTCTTTCCCTCACGCAGCCTGAAGCAGAAGGGGTGATAGTTCCAGACTGAGGGGAGGTACATTGCTGCGGTCGGTCAGGTATCCTCTCGTCCAGGTGATACCATTTACTATTGGTCCGTATGAGGgagggggttataaaataagtcTGTGGGGTAACAATGAAGTAGCCTTCAGGGGTAGGGTAAATCTTCCTCTCCCTTACTAACATGTTTAACGTGTGCCGAAGAATTTCGGGGCTTGGCGTGGGAACACCtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126472 lncRNA upstream 2827 26370092 ~ 26370326 (+) True G101273
TU126471 lncRNA upstream 3450 26369485 ~ 26369703 (+) True G101272
TU126470 lncRNA upstream 5248 26367597 ~ 26367905 (+) True G101271
TU126469 lncRNA upstream 8094 26364295 ~ 26365059 (+) True G101270
TU126273 lncRNA upstream 647575 25667828 ~ 25725578 (+) True G101116
TU126481 lncRNA downstream 97361 26475060 ~ 26475349 (+) True G101282
TU126517 lncRNA downstream 191405 26569104 ~ 26572523 (+) True G101306
TU126541 lncRNA downstream 202014 26579713 ~ 26579971 (+) True G101320
TU126564 lncRNA downstream 329177 26706876 ~ 26707101 (+) True G101340
TU126615 lncRNA downstream 1063328 27441027 ~ 27441243 (+) True G101381
AMCG00015867 mRNA upstream 17059 26333482 ~ 26356094 (+) True AMCG00015867
AMCG00015872 mRNA upstream 64421 26306627 ~ 26308732 (+) True AMCG00015872
AMCG00015870 mRNA upstream 67359 26270391 ~ 26305794 (+) True AMCG00015870
AMCG00015868 mRNA upstream 111664 26254913 ~ 26261489 (+) True AMCG00015868
AMCG00015869 mRNA upstream 119907 26242131 ~ 26253246 (+) True AMCG00015869
AMCG00015875 mRNA downstream 143491 26521190 ~ 26525630 (+) True AMCG00015875
AMCG00015876 mRNA downstream 149411 26527110 ~ 26562104 (+) True AMCG00015876
AMCG00015877 mRNA downstream 185022 26562721 ~ 26567558 (+) True AMCG00015877
AMCG00015882 mRNA downstream 295045 26672744 ~ 26699429 (+) True AMCG00015882
AMCG00015886 mRNA downstream 1440137 27817836 ~ 27840281 (+) True AMCG00015886
TU126442 other upstream 108845 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 1507601 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3692380 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 6104868 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 7601187 18744887 ~ 18771966 (+) True AMCG00015725
TU126639 other downstream 1512853 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2199801 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3255739 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 3788329 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 4426390 30804089 ~ 30809238 (+) True G101870

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_01061972_01081591.mRNA True 4782 mRNA 0.45 5 CI01000000 1060647 ~ 1082636 (+)