RNA id: TU126517


Basic Information

Item Value
RNA id TU126517
length 514
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G101306
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26569104 ~ 26572523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGGGAATGAGCCCCGTTCTGTTGATGCGCAAACACCACCTGCGTTGCTACCCGCTGTGACGAGCTCCGGCGCGCAGGTCCCGGCTCGGCCCGGAGGCGTCTCGGCCGCTGGAGGGTGAGGCTGCGGCCGGCGGAGGCTTCGAGGCGGCGGCACTCTCTGCCACGGGTCCGGGGACTTTCCCCTAGGCGCCGGGGAGAAACGCGTTCTCAGCGAGTGGCCTAGTGAACAGGTCTTCAGAATGCCTATGAGGAGACGGGTGCCTGGTCGGCTTAAATAGCCCCGAAACAGCTGCAACCCAGCCGCCCATGGTGTACATTGTGACCGCCTCTTCTTTTGCATCCGCCATGTTCCTGCTCTTGGTACGGTGACTGCAGGACGGTGTCTCtacaggaccagggctgcaAACGACTGTGCTGAAGAGACCCAGGGAATTAAGACAGCAACTGGATGGGTCTCCTTGACAGCACAATGTTTGGaatatgtctgctaagaaataaataataataatacta

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126481 lncRNA upstream 93755 26475060 ~ 26475349 (+) True G101282
TU126472 lncRNA upstream 198778 26370092 ~ 26370326 (+) True G101273
TU126471 lncRNA upstream 199401 26369485 ~ 26369703 (+) True G101272
TU126470 lncRNA upstream 201199 26367597 ~ 26367905 (+) True G101271
TU126469 lncRNA upstream 204045 26364295 ~ 26365059 (+) True G101270
TU126541 lncRNA downstream 7190 26579713 ~ 26579971 (+) True G101320
TU126564 lncRNA downstream 134353 26706876 ~ 26707101 (+) True G101340
TU126615 lncRNA downstream 868504 27441027 ~ 27441243 (+) True G101381
TU126621 lncRNA downstream 1096909 27669432 ~ 27669753 (+) True G101387
TU126637 lncRNA downstream 1414509 27987032 ~ 27989686 (+) True G101400
AMCG00015877 mRNA upstream 1546 26562721 ~ 26567558 (+) True AMCG00015877
AMCG00015876 mRNA upstream 7000 26527110 ~ 26562104 (+) True AMCG00015876
AMCG00015875 mRNA upstream 43474 26521190 ~ 26525630 (+) True AMCG00015875
AMCG00015867 mRNA upstream 213010 26333482 ~ 26356094 (+) True AMCG00015867
AMCG00015872 mRNA upstream 260372 26306627 ~ 26308732 (+) True AMCG00015872
AMCG00015882 mRNA downstream 100221 26672744 ~ 26699429 (+) True AMCG00015882
AMCG00015886 mRNA downstream 1245313 27817836 ~ 27840281 (+) True AMCG00015886
AMCG00015887 mRNA downstream 1326874 27899397 ~ 27963113 (+) True AMCG00015887
AMCG00015890 mRNA downstream 1433561 28006084 ~ 28018896 (+) True AMCG00015890
AMCG00015889 mRNA downstream 1465288 28037811 ~ 28040997 (+) True AMCG00015889
TU126474 other upstream 191405 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 304796 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 1703552 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3888331 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 6300819 20267407 ~ 20268285 (+) True G100338
TU126639 other downstream 1318029 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2004977 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3060915 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 3593505 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 4231566 30804089 ~ 30809238 (+) True G101870

Expression Profile