RNA id: TU126643



Basic Information


Item Value
RNA id TU126643
length 849
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G101404
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 27995810 ~ 27996946 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTCGACGCATGGGCAGAACCACTAGATGGCACAAGGAAGTGCAATCAAGCTTGAAATCGATCATGCCTGTAAACTGCAATGGCAAGATGTACAGTGAAAAAGGAGTTACGTTTTGGTCTGTTCTCAACTAAAACCGGTGATATCACTTCTGAAGACATTTATTAAAGCATTGGAGTCGTTTGGTTACTTTTCTGCTGCTTGTATGGTTTTTTTTGAACTTCATAGTTTTAGCACCCATTCCCTTGCATTGTAAGCACTTCAGAGCCCTGATTTCCGTCTAAAAATCTTTGTGTTCTGATGATGATAGAAAATCATACACACCTGGCATGGCATCAAGGCGTTTCATCAGGATAAATCCTGAGAGAGGCACCAAGGCTGGACGAGGCAAAGTCCTGTCAAAGCGTACGGGGAAGGTCACCCAGAAAAGGATGACATCAGTCAACCCTCGTGTCTCCAGTCTACTAAAGAAACGAATGGACTTGGAGTGGGACTTTATATAAGTCAGTGAACCCAgtcattcacacacaaacactcacatacgaacactctcacacacacacaaactcacacatgcacacgcacagacacacacaaacacgttctcagacactcacacacactgttttagtcattcattcagCCACTTTCTCAGTTATTTACTAACTTACTCAGTCTTTGTCTGTGTCCAGAGTTCAGTGTTTGGACAGACTGTGAGATgtgttataatatgtatttattatttatatggctgaaatttaagtttatttaccTGAATCAGCTTTGGGCTTTGTTTTACCAATTGCCTTCTAATTTTGTACAGATGTTCTGCACGAATGGGTTGTTGCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126637 lncRNA upstream 6124 27987032 ~ 27989686 (+) True G101400
TU126621 lncRNA upstream 326057 27669432 ~ 27669753 (+) True G101387
TU126615 lncRNA upstream 554567 27441027 ~ 27441243 (+) True G101381
TU126564 lncRNA upstream 1288709 26706876 ~ 26707101 (+) True G101340
TU126541 lncRNA upstream 1415839 26579713 ~ 26579971 (+) True G101320
TU126744 lncRNA downstream 448970 28445916 ~ 28446217 (+) True G101486
TU126763 lncRNA downstream 592627 28589573 ~ 28591059 (+) True G101504
TU126833 lncRNA downstream 1169989 29166935 ~ 29167213 (+) True G101555
TU126834 lncRNA downstream 1177831 29174777 ~ 29177324 (+) True G101556
TU126836 lncRNA downstream 1185585 29182531 ~ 29182869 (+) True G101558
AMCG00015887 mRNA upstream 32697 27899397 ~ 27963113 (+) True AMCG00015887
AMCG00015886 mRNA upstream 155529 27817836 ~ 27840281 (+) True AMCG00015886
AMCG00015882 mRNA upstream 1296381 26672744 ~ 26699429 (+) True AMCG00015882
AMCG00015877 mRNA upstream 1428252 26562721 ~ 26567558 (+) True AMCG00015877
AMCG00015876 mRNA upstream 1433706 26527110 ~ 26562104 (+) True AMCG00015876
AMCG00015890 mRNA downstream 9138 28006084 ~ 28018896 (+) True AMCG00015890
AMCG00015889 mRNA downstream 40865 28037811 ~ 28040997 (+) True AMCG00015889
AMCG00015893 mRNA downstream 151948 28148894 ~ 28167077 (+) True AMCG00015893
AMCG00015896 mRNA downstream 342466 28339412 ~ 28372662 (+) True AMCG00015896
AMCG00015894 mRNA downstream 387968 28384914 ~ 28386688 (+) True AMCG00015894
TU126639 other upstream 3796 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 1618111 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 1731502 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 3130258 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 5315037 22680210 ~ 22680773 (+) False AMCG00015796
TU126748 other downstream 580554 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 1636492 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 2169082 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 2807143 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 3265515 31262461 ~ 31287766 (+) True G101930

Expression Profile