RNA id: TU126763


Basic Information

Item Value
RNA id TU126763
length 1463
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G101504
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28589573 ~ 28591059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACAGAGTAAAAAGATATCTACTTTATTTCCCAGTGAGAACTGATATTTACAAGTTAGATATTTACACCTTCATCCAAGACCCACTGTGTATCTCAAATAGTTAATGCCTTAATATAGAAACAATCTGTATTTACATGGTATAAAAAAATTGCATACATTAATGGTTATGCATATCTTGTCAAGCAAAcaagtctttttctttctaaataccTTGTAAATTTCACGTCACccacaattacatttctggTCATCCAACTCACAGTATGTTaaattatttctatttaaaggaaaccaattcaaatcaatgcatttcaattcaTGAGAAAGCCTCTGAATTACTTCCCTGTTGGGACGATTCTACAATGAACACGATTCTATCAACGCATATTCATCTTCCTACATTCTTCCCCACACAAAGGCAGTAAATTCCCCACATAGAAAACAGACCAGTGCCATAGTTTTGTCTTTTGGTTGCCCAGGGAGGTAAAACAAAACCGACAcacaccttttttttaaatatataaatgaaccTCCAAAGAAAATGCTCATTcgcaaattaaaagcaaacaagtaACACAATCCAGCACAGAGCGGAGTGGCTCGATAAAAACGGGAATAAAAGCAAATCCCCTCTTCACACAGTTAAGCAACAAGGTAGATGGAAGGATAAAGTCTGGTTTTAGTGCCAGATGCTCTCGCTCGTTTCATTTCTATGCACTGACTGGAGTGCAGCAGCTGTTAACACCAGACATGATGTATTACAATGAAAGAAAGGTAGTATTTTGGGGATTTGACAGCTATTGGAACTCAAATGTATGGATTCCTGCACCTATACCTTTGTTATAAATGCACagctacaaaaacaacatgctttTCTCGTGTAGTTTGTTACCCCTGAGCAAAAACCCATCGAAAAGAAGTACCTTGAGAAACACGAAgaccaaaaaaggaaaataaaaaaaaacatgtaaacaatctAAAGACTCAGAGAGATGAAACACACGTTAAAATTGTAAACAGCCGATATAGACGGATGCTCTGCTCTCACAGTCCTCCTTCACTACATTATTTACACTCGTAAAAGTCTGTAATGCAGCAGTGACACAGGCAGATGGTGTTCTCAGTCCGTGACGTGTACAGTGTGTCGAGAGGCGGCCGGGCGGCACTACACTGCCACGATGTTGTTCATCTCCCACTTCTGggtggttttgttgttgtcacaGTCCGCTATGAAAACCTGATGGAGGACTTCAGAGCGGTCCAGACATTTTCCCGTGTGGAGGTGCGTGAATCTGTGCAGGTCCTGTGGAGGGAAACGGAGAAACTCGAGTTAGGGACCTTGAAAAGGAAAAACGAACAAGTTATGTGCCAGGAATTAATTCAGCGTCAAATCTAATCAGGTTAAACCCATTTCAAATCACAGCACAACACTCCtaataagacagtgtccaattgagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126744 lncRNA upstream 143356 28445916 ~ 28446217 (+) True G101486
TU126643 lncRNA upstream 592627 27995810 ~ 27996946 (+) True G101404
TU126637 lncRNA upstream 599887 27987032 ~ 27989686 (+) True G101400
TU126621 lncRNA upstream 919820 27669432 ~ 27669753 (+) True G101387
TU126615 lncRNA upstream 1148330 27441027 ~ 27441243 (+) True G101381
TU126833 lncRNA downstream 575876 29166935 ~ 29167213 (+) True G101555
TU126834 lncRNA downstream 583718 29174777 ~ 29177324 (+) True G101556
TU126836 lncRNA downstream 591472 29182531 ~ 29182869 (+) True G101558
TU126838 lncRNA downstream 595046 29186105 ~ 29186327 (+) True G101560
TU126931 lncRNA downstream 987470 29578529 ~ 29595891 (+) True G101638
AMCG00015902 mRNA upstream 1293 28586425 ~ 28588280 (+) True AMCG00015902
AMCG00015901 mRNA upstream 8929 28577870 ~ 28580644 (+) False AMCG00015901
AMCG00015900 mRNA upstream 46044 28541050 ~ 28543529 (+) True AMCG00015900
AMCG00015895 mRNA upstream 148261 28432038 ~ 28441312 (+) True AMCG00015895
AMCG00015897 mRNA upstream 190045 28396972 ~ 28399528 (+) True AMCG00015897
AMCG00015908 mRNA downstream 488370 29079429 ~ 29107579 (+) True AMCG00015908
AMCG00015912 mRNA downstream 600047 29191106 ~ 29195801 (+) True AMCG00015912
AMCG00015911 mRNA downstream 661827 29252886 ~ 29259988 (+) True AMCG00015911
AMCG00015913 mRNA downstream 749425 29340484 ~ 29352375 (+) True AMCG00015913
AMCG00015915 mRNA downstream 809452 29400511 ~ 29409924 (+) True AMCG00015915
TU126748 other upstream 8744 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 597559 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 2211874 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 2325265 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 3724021 24865089 ~ 24865552 (+) True G101061
TU126954 other downstream 1042379 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 1574969 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 2213030 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 2671402 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 3149469 31740528 ~ 31746116 (+) False AMCG00015959

Expression Profile