RNA id: TU126931



Basic Information


Item Value
RNA id TU126931
length 472
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G101638
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29578529 ~ 29595891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


taaaaaaaaaaaaaaaaaaaaaaaaaaagtggaaaagtaccccccccaaaaaaacaaaaaaaaactgttcaatttCATGTCGGTTAACAGGTCAAACCGCCGAAATGCCTACAGCTGTCGATCTGTTGCTGAGGGGAAAACGATAGCAACCTGAACTCATTTCGTCCAGATTTAACCagttgttaaaattaaaaaaatcataatctaaaagaagagtgtgtgtgcagcGGGGATTGAAGTCTAGCGGACGTGGATATGGTGCGTTAGAAACCCCTCGAAGGGCCATTTCGGGGACCGCTCATCCAGGTCTCTCCTGTATCGCAGTACATTTGGCAGCACTGTCCTGTCCTTTTATCCCCCCCCAGCGACAAATCAATCTTCGTCCgcatcctcttcctcttcatcaTCGTCGTCGTCTTCGTCTTCATCTTCGAGCTGGTCCCTGGCATCCAGGTCGTCCTCGTCTTCGATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126838 lncRNA upstream 392202 29186105 ~ 29186327 (+) True G101560
TU126836 lncRNA upstream 395660 29182531 ~ 29182869 (+) True G101558
TU126834 lncRNA upstream 401205 29174777 ~ 29177324 (+) True G101556
TU126833 lncRNA upstream 411316 29166935 ~ 29167213 (+) True G101555
TU126763 lncRNA upstream 987470 28589573 ~ 28591059 (+) True G101504
TU126990 lncRNA downstream 110086 29705977 ~ 29728715 (+) True G101678
TU127198 lncRNA downstream 999187 30595078 ~ 30597798 (+) True G101848
TU127199 lncRNA downstream 999187 30595078 ~ 30641350 (+) False G101848
TU127300 lncRNA downstream 1671514 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 1677281 31273172 ~ 31316692 (+) True G101935
AMCG00015917 mRNA upstream 27432 29549604 ~ 29551097 (+) True AMCG00015917
AMCG00015914 mRNA upstream 91947 29482269 ~ 29486582 (+) True AMCG00015914
AMCG00015915 mRNA upstream 168605 29400511 ~ 29409924 (+) True AMCG00015915
AMCG00015913 mRNA upstream 226154 29340484 ~ 29352375 (+) True AMCG00015913
AMCG00015911 mRNA upstream 318541 29252886 ~ 29259988 (+) True AMCG00015911
AMCG00015918 mRNA downstream 28154 29624045 ~ 29652938 (+) True AMCG00015918
AMCG00015919 mRNA downstream 69691 29665582 ~ 29679948 (+) True AMCG00015919
AMCG00015922 mRNA downstream 130483 29726374 ~ 29737732 (+) True AMCG00015922
AMCG00015921 mRNA downstream 149537 29745428 ~ 29761435 (+) True AMCG00015921
AMCG00015928 mRNA downstream 483400 30079291 ~ 30082474 (+) True AMCG00015928
TU126748 other upstream 997700 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 1586515 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 3200830 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 3314221 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 4712977 24865089 ~ 24865552 (+) True G101061
TU126954 other downstream 37547 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 570137 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 1208198 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 1666570 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 2144637 31740528 ~ 31746116 (+) False AMCG00015959

Expression Profile