RNA id: TU126990


Basic Information

Item Value
RNA id TU126990
length 2908
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G101678
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29705977 ~ 29728715 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttaatttgttaaatttttattttgagaaaccTTAGTCCAAACATACATCTTCTCTTTTGTAACACAATATTTACACAATTCTTCCATGTTTTAGGGAGTGTCTTCACAGATTGTGTCATCGCGCCAGTGTCCAGTTAGCAAGACAGGAGCAAACTGCCATAATGCCTCCACAAGGTTTACAGAATAACACGTAACACCATCGCACGCTGTAAAGCTGACAGTGACCTCAGAGTAGAATTATCTAGTCCTGGTAAAAGGCCCAAACATGCCTTGCCTGGTACTTTACATGGTTATGCATGGCAACAAAGATGGTAGAATACTCCAAAATGTAAAACCCAACAAGCAATTTTAGTGCACATTAGTACACTCTTTTGTagaattatttttgaaattgtctGGTGggggtaaaaacaaacattatattaacattaaaacagtagTCCAATTTCTACTTTTGTGCTTTGTGCATTGGTGCATTGTTTAATGGAAATCAACTTCAACTCAGTTTGACTTCCTGTATGATTTCCCATTTCCCAGAATCACATTGTGTTggaaaattcactttttttttatttttttattaatttgttttaacaacTGACCAGATTAAAGCTTTTTCCTATTACTTGCACATCTTTTCCTGCACTGTATGTTGTTTTCTCAGCACACTGGCTGGCTGTCAATACTGTGTAGATAAGAATGGCCAAAGACGTCAATGATTTTAGACCAGGTGAGTTCCAGGGGAAGGTCAGATAAACACGCCAGGTTTGTGATCTGTAAACAGACCCCAATTCTAGCAGCAACACTTGCTTACTCTGGAAaccacacagcactgacatcaCGTCAACATCCAGTGGCGTTCAATAGCTGGTGATTTTATGGGCTGGATTCACAAACCCCGCTTAGCATTATTCTTAAACTCTcgcaatgttattttaggtagggtaATCCCAGACTAGGACTCTAATCTAGGTTTGAGAAACCAGCTCAAAGTGCATTTACTAAGTTCAAGCTGTCAAACTAAACAGTTGTTGACCAGGAAACAAAcacttaataattaaaaagtccacatttaaaaataaataaatgcgacgctttctaaaataattaattcactaTGAAATAAAGCTGATGGTTGATTTGCTAGTGTTTGACCGATTCCAAGACCTCAGCCGACTGAACATTACCCGGACAGAAGAAATCGGTTTAGCAGTTtcataattaacaattaataaacTGCACCGGAGTCAGTTTTGCGAGAGGTGTCTAAGCACTGGGAAGCAAACGACTTGAGTCTTGTTAAGTCTGTGcgcttttccatttaaaaactaCACCAACACATTTTCGAATGTTTCAAGTGTTATGGTTTAAACatcccttttttaaaataaatacaaaatcaggtGTGGGAGCATTTGTAGCCTGGGATTAAGCAATCCAAACATACCTAATAAACACTCAAACCCATTGTTCAAAATGAGTGTCCAGAATATCCATCTATTGATGAAGTACTGTTGTTCTGGGATTCACAATATGTAGcttaaaattgtgttaaaacTAGACATCATAAGCCGCTGTGGAGCATTCTGcgattacaaaataatttcaaacacaCCGTGTTAAAGAGACTCGAGCCACACAGCTGGCAGCGGTTAGGAACTGAAGCGTTGTGTGAGTTGTGTTCTCCCCACCCAGAGAGAGACATTTACAAGGaccacatatatacaaatatattgtactAAAACAGCAGCATTGTTTTGCCTGgtgacaaaatgtataaatattaatatatatacagttcataTTATACAAATACGAAAGATCTGTGTGCAAAGCACTTTGGAGCATCAGGACTGTACAGTCAGTTTCTGCGATCAATCTCCAGCGCAGACAATTCGAAACGCACATCTGGCGTGTCCTATGAAACATACACCTTCTCTCCCGCCAAAGCCTTCACTGCCAATGCTCCCCTTTTCCTCCTCATGAAACACCGCCAGTTTCAAATATACTTCACATCTGTGATTCACAAGCTTGTGCCTTGTTTTGTGGGTTTAAATGCAATCGTTAATTTGCCAGCTCTGTCAGAGCCACTCAGACACAATATGAACCCCCTTATCTGTCACGACGCACCTCCACACCCAGTGCGTCAGCTCTCTGACCTTTTTCTGCTGCCAATGAGGTAAAAGAGGCTGATCTATAAAAGTGAATACACTTCTCTACTCTGGCGTGGTTTCTGCACTACTTCAGTGTTCATAAACAAGGAGGTACATTTATATAACTCGTATGCCATGTCTTAGTGGGCAATGATACTCAGCTtatttgcaaaaaacaacaaccacttccgcacacacaaacacttacaCATACACTCAAGAAAGACTGACTGTCCAAAGTTATGAGGCAACCTGAAAAGCTAACGGAAACCCTTCTGGGAAAGGAGAACATGGTTCACAACCCATTAGCTGATGGGAAATAACATTAATCTCCAACGAAAATATTTCTATCATATGCCATGGAGTTTCACCTCCGTTACCACTGTGGACACATCTTCACCTTTTACCGCAACAGACCCAGGCAAAAGACGGTCCGAGTGCTGCGAAATATCTGCCCTCTAACAGGTGGCTGGGAGTGCGACAATTTGGGGTCGTCTTGCTGGTGTACAAACTGGAGATGGTGAAAAGGTGCGACATCACATTGAAAAGGATGTGACGGGACACGTAGACCATAAATACTGGGGCAGCGTTTGTAGGAAGCCGAGCTTTCAGCAAAATTATTCCTCCTTTCCCAGATGGATTTCATTAGGTTTTCTAGGCAGCTTGCATTATTTTCACTGAGATATCAAGTGCCATGGAGAAAAAGATTGTTCCCTTTGATCATGCCTTCAGTATAGGCTAACAAACCAgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126931 lncRNA upstream 110086 29578529 ~ 29595891 (+) True G101638
TU126838 lncRNA upstream 519650 29186105 ~ 29186327 (+) True G101560
TU126836 lncRNA upstream 523108 29182531 ~ 29182869 (+) True G101558
TU126834 lncRNA upstream 528653 29174777 ~ 29177324 (+) True G101556
TU126833 lncRNA upstream 538764 29166935 ~ 29167213 (+) True G101555
TU127198 lncRNA downstream 866363 30595078 ~ 30597798 (+) True G101848
TU127199 lncRNA downstream 866363 30595078 ~ 30641350 (+) False G101848
TU127300 lncRNA downstream 1538690 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 1544457 31273172 ~ 31316692 (+) True G101935
TU127349 lncRNA downstream 1944772 31673487 ~ 31674507 (+) True G101964
AMCG00015919 mRNA upstream 26029 29665582 ~ 29679948 (+) True AMCG00015919
AMCG00015918 mRNA upstream 53039 29624045 ~ 29652938 (+) True AMCG00015918
AMCG00015916 mRNA upstream 127142 29572501 ~ 29578835 (+) True AMCG00015916
AMCG00015917 mRNA upstream 154880 29549604 ~ 29551097 (+) True AMCG00015917
AMCG00015914 mRNA upstream 219395 29482269 ~ 29486582 (+) True AMCG00015914
AMCG00015921 mRNA downstream 16713 29745428 ~ 29761435 (+) True AMCG00015921
AMCG00015928 mRNA downstream 350576 30079291 ~ 30082474 (+) True AMCG00015928
AMCG00015930 mRNA downstream 355294 30084009 ~ 30110354 (+) True AMCG00015930
AMCG00015929 mRNA downstream 406820 30135535 ~ 30154322 (+) True AMCG00015929
AMCG00015932 mRNA downstream 448535 30177250 ~ 30183373 (+) True AMCG00015932
TU126954 other upstream 67196 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 1125148 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 1713963 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 3328278 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 3441669 26263915 ~ 26264308 (+) True G101248
TU127075 other downstream 437313 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 1075374 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 1533746 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 2011813 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 2013519 31742234 ~ 31746116 (+) True AMCG00015959

Expression Profile