RNA id: TU127225


Basic Information

Item Value
RNA id TU127225
length 2644
RNA type TUCP
GC content 0.39
exon number 2
gene id G101870
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30804089 ~ 30809238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcaaacaaaatatgtaaatgtttattaagcattagttatttttctttattataagcattataattattacatattatatttacagtCTGAACAAACATCAACAGATAccaattagaaaaagaaaaagaaaaagaaatccaaaGCCAGCACCCATGAAATCGATTCAACAGTCCGATTTGTGTGACAGCTTGGCGTTGGGGACCACGAGGTGGCGCTGCGGTGGCACTGCTCAGCTCACAGCTCGGCCACAGCAAGCGCTATGGACCGGATGTTGGTTTGCTTCCTTTCTTTGATTATCTGACTATTGCTGTCTGGAAGAAACAGTGTAGCCGAGCGACGGACAGGCATCTGTGGTCACATGGtacagagaagagagaaggCAACTTCTTATGCTCTTAAGCGCTGTTTGTAGCACCATTGTAACTGCTCACCCCTTTGAATGATTAATACTGAagttataagaaaaaaaaacatcaaccagGACACATTCGTAcacaagattttatttattgtattgctcATCTCTCTGTTCATAGCCTACATGCATCTGCAAGCGCGATTCAATTCAAATGCACTTATTCAAGTATCGACAGTaagtcttttttgttgttgctgttgcagaTTTAGTTTGAACAAGGCTCATAGTGAGATGATATTACAAAGACAAGGCCAcaagtgtgtttctgttttgtcatttgtttttttacaggtaTGTATATTATTGCTTCCCCTCAGTTTATTAAAGAGGCTTAGGGCCATGTTCGTAAAACTTTAAAAGCATGTTAAGTTGACCACCCCTTTTTGAATAGATGAAAAAcaccatatatacatacatacatacatacatacatacatacatacatacatacacacatatatatatttatataaatataaaatattacttttacttAGATTCtatgtttatataatttaaaatggcttttgtAAAGATGCAGCTTTTAAAGTTGGTGTATATAACATACTGACATGAAAATAGTAACTATTTTGTCTATTATTATGACTGATATTCTTTACATATGAGTATGTTCACAGCACAAATTGGGCATTTTACTTATTCACATACCTATAATTGGGATATGAAGTCAAGCAAAGCATGCGTACATCAAACAACCTGGGACACAATACAAAAGAAGAAACTTGAAAAGTATAAGAAAGTAATCTCTCAAAATGTCCTTTTTTCCTTTAACGTCTGAAACTTGACGCCAAAGTACTGGACAACAGCAGAGCCATTCTTATATAACCGCatgaaaatatgttaaaaactGACAGTTTTAAACAACTGTagcaattacaaaaatgcaataagttaaaatgaaatgtcaatGATTAACTATTGCTAGTTTTCACTCTataaaacagacacatacaaGGTAGACATTGACAGTTCCCAATGCAGACTGAGACATTTGTTATTTACTACGATTAGAACAGTTTTATCGAACGTATCTTCCCCTAAACTACTTGTAGCATCGTTTTAAACATGAGGTAAAATTGCTGCGTCTGTGGTGCACAGTAAGACACCACTCGTCTATTTCATTGATGGTTTACTCTTCTTCTAACAAATGCAGTGTAAAACTGTAGCAAAACACTATTTTTACAGCTACTGCAAAGTGTGGATTCTCTCGTTGGATCCCATGTATTCAAGTGTCGTTGGCTCCTAGTAGCTGCAAGAACACGTGAacacccacaatgcacctgTGTGTCAGGGGGTTGGGAGCAggtatatatttaaaggaagGCCTTTTGggttttaaaaagtgaaaaaataaaacaaactaacagatgcaggtggggcgggggggagtGTGCTTCTCAAaccaaaacaacatattttaaaggaCATTAGTGGAATAGTAATAAATAGAAGAGatttggttttctgttttaaatatttacctgATGTTCAGCAGTACAGTAGTTTAATGTTATAAAgtatcacttaaaaaaaaaaaaaaagataatttaaattaatttattaaatctcAGTTTCAAGGACAGAGTCGACATTCGTTAGACACCTCGCCTGTTCGCCTCGGCCGCAACAAGTCGGGTTTTCTACAGGAAAAGGTGttctgaaggaaaaaagttGAATGAGTGATTTTTAGATATGGATTTTGGCCTCCGAATCActgttttcctttcctctttAACCTTCACTTTTCTCCACCCCTTTAAACACCAGCTTTGTTACGAGTGCATGACAGATGTCGGATGCTGTCCCTTGCATTGAGTTTCACACCAGCGGAGCGCCTGCGAACGCTCCTATTTTACCTTCTTGTCGTGCTTGATGTGGCCGTTCCTTTTGTGCTTCCCGTTGGGGATCCCGTTGTAACAGTGTCCGTTGGCCTTAAGCGCCACCGAGGCGGGACACATCCTGGCCGTGATCAGTCTCGCTATCCGGTACACGGTGTAGAGGATGGCGAGGATGGCGAGGGTCAGCACTGCTGCCACGTCGAGCAAAAAGTACTGGTAGAAAGGGACCTCGTAGACGGCGGAGCGCAGGTGGTCCGCGCCGTCGTGCCGGAGGATGTAATTGATCCAGTAGACCGCGCGGCTGATGGGGTGTCCGGGTTGGTCCTTGTGGATATTGGACAGCACCTGAGCACGCTGCCTGAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127199 lncRNA upstream 162739 30595078 ~ 30641350 (+) False G101848
TU127198 lncRNA upstream 206291 30595078 ~ 30597798 (+) True G101848
TU126990 lncRNA upstream 1075374 29705977 ~ 29728715 (+) True G101678
TU126931 lncRNA upstream 1208198 29578529 ~ 29595891 (+) True G101638
TU126838 lncRNA upstream 1617762 29186105 ~ 29186327 (+) True G101560
TU127300 lncRNA downstream 458167 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 463934 31273172 ~ 31316692 (+) True G101935
TU127349 lncRNA downstream 864249 31673487 ~ 31674507 (+) True G101964
TU127350 lncRNA downstream 869474 31678712 ~ 31679106 (+) True G101965
TU127351 lncRNA downstream 873827 31683065 ~ 31683412 (+) True G101966
AMCG00015941 mRNA upstream 413502 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015938 mRNA upstream 454656 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015937 mRNA upstream 467820 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015940 mRNA upstream 494776 30297468 ~ 30309313 (+) True AMCG00015940
AMCG00015931 mRNA upstream 615464 30183498 ~ 30188625 (+) True AMCG00015931
AMCG00015949 mRNA downstream 155478 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015953 mRNA downstream 395336 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015959 mRNA downstream 924529 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015966 mRNA downstream 1140469 31949707 ~ 31951813 (+) False AMCG00015966
AMCG00015964 mRNA downstream 1174731 31983969 ~ 31986525 (+) True AMCG00015964
TU127075 other upstream 635800 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 1165308 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 2223260 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 2812075 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 4426390 26373153 ~ 26377699 (+) True G101275
TU127298 other downstream 453223 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 931290 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 932996 31742234 ~ 31746116 (+) True AMCG00015959
TU127412 other downstream 1139237 31948475 ~ 31951870 (+) True AMCG00015966
TU127466 other downstream 1354958 32164196 ~ 32171075 (+) True G102064

Expression Profile