RNA id: TU127349



Basic Information


Item Value
RNA id TU127349
length 1021
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G101964
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31673487 ~ 31674507 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTTTgcaaatgtctttatttctcCCGAAGGAGCCAGTGGATTGATTTACAGGTCAGGGGGGTTATTTTGGGTTCCCCTTCAACGCAGCATAGAAGCaacattaaactgaaatgaacGAATATGCAAAATCGagattttatacaatatttacatatggagcttaaatgtactttatatttGCCCGCCTGAAAGAACAtcaacaaaaggaaacaaagcatTAAACCTGGGACCAATTTCCCAATTTGAGCTGCATTGTGCTTAATCCATAGGTCTTGTTAAAAAAGGataagggttttatttttcacttggaCCGCAGGCCGGGTAACACCCAGCGGGCGCCGCTTGTGAGGGCGAGGGAACGGGTGCCATCTCGCATTGCTAAGGAACAGAGAGGAGAGCCCTGTTTACAGCCCGAGAGCGTCCCACTGTCTCAGGGTTTCCCCACTCGATCCGAAGATGCCACGGAGCTATGGGCCGAGGTACGAACGTGATGCGCTTGCGCTGCAGAGCGACAGCGGTGCGTTCTCACTGGAGATTCCTGCCGAAACAGGATCGGTTTCATTAACCTGGAGACAGGACTGCAGGAGTGTGCGTgcgtacaaaataaaataaaaactgattaaaaaaattagTTGTTTTAGTCCCCCCCCAAGATAATGCCTCAAGCTGTGGcgattgttttgatttattttaaggtaTAAAATGGAATTTACAAAAGATATCGGGGGTCTGGGCGATCTTTAGATCTACAGATATCTATATAGACACAAACTGGaccaaagaaacaagaaaactaaCTCTGTCGCTGGGAAGAGCCTTCACACTCTCAACTCTTCTattcttacaaaacaaaacaaagacagcacCCCTCATCCCACAGACGGGGGCGGCCCTCAAAGATGATCTCGCGAGGCCCTCGGCTGCAGTCCTGTGTGCTGCGCTCACCAGAGACCGGGCCCCCGCTCAATACCGGGCTGCTTTCTGTGAGGGGAAGCGGCCGTGCGACGGGGGACCGCTGGA

Function


GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU127307 lncRNA upstream 356795 31273172 ~ 31316692 (+) True G101935
TU127300 lncRNA upstream 385721 31267405 ~ 31287766 (+) False G101930
TU127199 lncRNA upstream 1032137 30595078 ~ 30641350 (+) False G101848
TU127198 lncRNA upstream 1075689 30595078 ~ 30597798 (+) True G101848
TU126990 lncRNA upstream 1944772 29705977 ~ 29728715 (+) True G101678
TU127350 lncRNA downstream 4205 31678712 ~ 31679106 (+) True G101965
TU127351 lncRNA downstream 8558 31683065 ~ 31683412 (+) True G101966
TU127355 lncRNA downstream 32299 31706806 ~ 31707293 (+) True G101969
TU127356 lncRNA downstream 41947 31716454 ~ 31717321 (+) True G101970
TU127365 lncRNA downstream 59667 31734174 ~ 31734954 (+) True G101979
AMCG00015953 mRNA upstream 457390 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015949 mRNA upstream 702604 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015941 mRNA upstream 1282900 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015938 mRNA upstream 1324054 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015937 mRNA upstream 1337218 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015959 mRNA downstream 59260 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015966 mRNA downstream 275200 31949707 ~ 31951813 (+) False AMCG00015966
AMCG00015964 mRNA downstream 309462 31983969 ~ 31986525 (+) True AMCG00015964
AMCG00015967 mRNA downstream 320074 31994581 ~ 31995965 (+) False AMCG00015967
AMCG00015968 mRNA downstream 399746 32074253 ~ 32075287 (+) True AMCG00015968
TU127298 other upstream 385721 31262461 ~ 31287766 (+) True G101930
TU127225 other upstream 864249 30804089 ~ 30809238 (+) True G101870
TU127075 other upstream 1505198 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 2034706 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 3092658 28577500 ~ 28580829 (+) True AMCG00015901
TU127369 other downstream 66021 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 67727 31742234 ~ 31746116 (+) True AMCG00015959
TU127412 other downstream 273968 31948475 ~ 31951870 (+) True AMCG00015966
TU127466 other downstream 489689 32164196 ~ 32171075 (+) True G102064
TU127514 other downstream 707742 32382249 ~ 32397410 (+) True AMCG00015981

Expression Profile