RNA id: TU127350



Basic Information


Item Value
RNA id TU127350
length 395
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G101965
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31678712 ~ 31679106 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCCTTCTGCTCAGATCTTTGCATTTTCTTCAGCATGTTCTGCGgcttcttctttttctgcttGGCTTCTTTCTCCTTTTCGTCATCACTGAAATCCAAAGCCTggggagaaaagagaaagagcatacatacatacataaatccaCACACACGTGTACATATATGCCAACGTCCGAGTAGCACACTTCAGAATATCAGAACCACCCTACCGGCGTCTTCCAAATATGCCCCACGTATCGCATCTCCCTGCGTGTGTCGGGCATGGGACCCCCCCAGGATGCATCAAGTCAATTCAATGCTGACCTTCTCCCTGTGATTATATGATGAACATGGCCTGCAGACCTTCATTATGGACGCACACAACGCGTTTCACATTCGCCTCCTCTGACACGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU127349 lncRNA upstream 4205 31673487 ~ 31674507 (+) True G101964
TU127307 lncRNA upstream 362020 31273172 ~ 31316692 (+) True G101935
TU127300 lncRNA upstream 390946 31267405 ~ 31287766 (+) False G101930
TU127199 lncRNA upstream 1037362 30595078 ~ 30641350 (+) False G101848
TU127198 lncRNA upstream 1080914 30595078 ~ 30597798 (+) True G101848
TU127351 lncRNA downstream 3959 31683065 ~ 31683412 (+) True G101966
TU127355 lncRNA downstream 27700 31706806 ~ 31707293 (+) True G101969
TU127356 lncRNA downstream 37348 31716454 ~ 31717321 (+) True G101970
TU127365 lncRNA downstream 55068 31734174 ~ 31734954 (+) True G101979
TU127389 lncRNA downstream 149084 31828190 ~ 31828574 (+) True G101997
AMCG00015953 mRNA upstream 462615 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015949 mRNA upstream 707829 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015941 mRNA upstream 1288125 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015938 mRNA upstream 1329279 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015937 mRNA upstream 1342443 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015959 mRNA downstream 54661 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015966 mRNA downstream 270601 31949707 ~ 31951813 (+) False AMCG00015966
AMCG00015964 mRNA downstream 304863 31983969 ~ 31986525 (+) True AMCG00015964
AMCG00015967 mRNA downstream 315475 31994581 ~ 31995965 (+) False AMCG00015967
AMCG00015968 mRNA downstream 395147 32074253 ~ 32075287 (+) True AMCG00015968
TU127298 other upstream 390946 31262461 ~ 31287766 (+) True G101930
TU127225 other upstream 869474 30804089 ~ 30809238 (+) True G101870
TU127075 other upstream 1510423 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 2039931 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 3097883 28577500 ~ 28580829 (+) True AMCG00015901
TU127369 other downstream 61422 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 63128 31742234 ~ 31746116 (+) True AMCG00015959
TU127412 other downstream 269369 31948475 ~ 31951870 (+) True AMCG00015966
TU127466 other downstream 485090 32164196 ~ 32171075 (+) True G102064
TU127514 other downstream 703143 32382249 ~ 32397410 (+) True AMCG00015981

Expression Profile