RNA id: AMCG00016008


Basic Information

Item Value
RNA id AMCG00016008
length 2625
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00016008
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 69832 ~ 92850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACATTAGGGTGAAAGCTCCAGTGCTTTGTTTGCTCTTTGAGTTCACTTAACGCACACAGAGTCTCTCTCAGAAAATAAGATGCTACTCGCTAAACTGAATTGGCTGACCTGCTGTGACTAACCTCAGGACTATACGGCTCTGctcttctgtcttttttatatttatatatgtattcatttattttcacctTTAATGTAACAATGCTGTTCAATTACCTGAATACAAGTTGCAACTTGAGAATGATTCCTATATTGTGGGGAGTGCTATTATTGGCTCAAAGCAGCTTTGGTGCAAGAGTTGTTAGCGGTCAAACTGTGTGTTACGGTGGACCAAAGCACCCCTGCTATAAGATTGCCTACTTCAAAGACATGTCCAGCAGAGTAGCCTTTGAGGAAGCACGCAAGGCCTGTGAAATTGATAGCGGGGCTCTTCTGAGCATAGAAAGTGAAAAAGAGCAGAAAGTCATAGAAAAACTATTGCAGGACTTAACCTCTTCGGGCTCAGGGATTTTGGATGGAGACTTCTGGATTGGCCTAATGAGGAATGGGGAAGGCCATGAACACGGCTCCTTCACTGCCTGCCCAGACCTGTACAAGTGGACAGATGGGAGTGTGTCTCAGTTCAGGAACTGGTATTATGATGAGCCATCTTGTGGAGGGGAAGCCTGCGTTGTGATGTACCATCAGCCCACTGCACACCACGGACTCGGGGGAGCATACCTCTACCAGTGGAACGATGACCGATGCAACATGAAGCACAACTTTATCTGCAAATATGAACCAGGTCTGCTTCTAATTTATGTCATCATTCCTACAATCCCTCTGTTGCTGTTGATTCTAGTGGCCTCTGGTACCTGCTGCTTTCAGATGTTAAGCAAGAGCAAACCTCGGACGAAAACCAATCCGAACCAGTCAACGCTCTGGATATCAAAGACatccaagaaagaaaacagcatGGAAGTGTAACCTtgaaatcacaaaaacaaaaaacaacaaaaacaaaacactagaCTTTTATCCAAGTGATGCTTTACCTACCAACAAAGTCATGAGAATGGTATCAGAACACAAGCCCTAAAAAACACAGGGTATAACGAAGGCTGTCTTACTGATAAGCCAGATCATTTAGGGCAGAGACTTGTGAAATTTGAAAGATCATTAACTCGTATGACCAGGCACAGAGTCTGTGGTTTAATAGTGTACGGCTGTCTAAACAAATCGTCCTTAAAGAAAAACTCATGCATGCAAACTATTTTCCACTTTATTGTTATGGCTGTAAGTATGTTTTTGTTGGATAAAAGGACATATTGTTTAACAAAGCTCAATTATGTACTGCAAAAGTTTTAAAGAACCACACATGCTTTCTCCTTTCATAGTTAAACAGGATATTAAGGGTGTCTCATTTTGAGGTAACGCATGATATGTTAAGGTTCCAGTTACATTCTGCCATAATTGTTCCATTTAGACTTTTTCCTCTTTATCAGTACATGCCTGAAGGAAACCATAAAAACCTTAgcatattaacaaatacaagaaaagcaCATACCAGAATaaagcatatttgttttcattatattccatattgtttcaaataagcTGCAATTGAGAATTTACTGGTGTTCATTTCAGAAGCTGATACAAATTACAATCCTGGTAAGTTGCTAAGGGAAAGTGTACATCCTGTCAATGGGAGATCCCCTGTGAAAATGATTGAATCaaggcaaaataaacaaatctgaacTAAACATTTGCATACAGTTGGTAATATGCATTGGGCACACTTACTTTCACATTCTTCACCTAGTATGTGTTCAGCTCCACACTTGTATATATTGTAAGTGTGACTTTACCTCAAGGCTTTACATTAAGAATGAGCATACAGCTCTCTATAACACTAATTGTCTGCtgatacagtgaaggaaaaaagtatctgatcccctgctgattttgtacgtttgccaactgacaaagaaattatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaataaaaaaaatctaaatagaaATTAGGTTTACTATATCAGCTCGACAAGCATCAGTGTGTTAAACACTTTCTAACCACCATCACTGCTCTGCAGCactcttaaattaaaaaatatatacagtatatttgtcCTCCTGCCTTCAAAgtcattaaaataagaaattctACTTAGAAATGTTAAGGGTTCAAACTGGAATGGGTAAATGAGCTAAGGCAAAGATTAATTCATTTGAACTTTGAAAATAGATTAAAGTAATTAAGacttacacaaaaaacaagattaaagGCATTTCAAATCCCAGATGAGATAAGGTCAGACAATTTAaaatttcacaaaaaaaaaagaaaaagagcatGGGCATTTTGcataattaaagagaaaaaaaaatgaacagaattaaaacagaattacaAATAAGAATGTgtcacaaaatgttattttaagacTGTGCTTGCTAGAAACGTAAAGCCATGAGTCAGACTGCACTATTTAGTAGTAATACtttttgacttgtttttttcagtaaaaAGTTATTGTGATTTGTACATATGACTTAATCCTTATGCGTGGTTGAAATAAAGAGTATCTGAC

Function

GO: NA

KEGG:

id description
K10078 CHODL; chondrolectin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12684 lncRNA downstream 107440 200290 ~ 201002 (+) True G10185
TU12729 lncRNA downstream 132373 225223 ~ 243082 (+) True G10218
TU12745 lncRNA downstream 201271 294121 ~ 315956 (+) True G10230
TU12749 lncRNA downstream 255672 348522 ~ 348895 (+) True G10234
TU12789 lncRNA downstream 1104779 1197629 ~ 1197883 (+) True G10263
AMCG00016009 mRNA downstream 113040 205890 ~ 221884 (+) True AMCG00016009
AMCG00016014 mRNA downstream 164377 257227 ~ 269920 (+) True AMCG00016014
AMCG00016016 mRNA downstream 696336 789186 ~ 799369 (+) True AMCG00016016
AMCG00016017 mRNA downstream 862798 955648 ~ 996162 (+) True AMCG00016017
AMCG00016015 mRNA downstream 916938 1009788 ~ 1035222 (+) True AMCG00016015
TU12879 other downstream 2219748 2312598 ~ 2313159 (+) True G10350
TU12903 other downstream 2392692 2485542 ~ 2487751 (+) True G10371
TU12970 other downstream 2666497 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 2666497 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 2666497 2759347 ~ 2761719 (+) True AMCG00016030

Expression Profile