RNA id: AMCG00016011


Basic Information

Item Value
RNA id AMCG00016011
length 4466
RNA type mRNA
GC content 0.39
exon number 15
gene id AMCG00016011
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 90982 ~ 113565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTTTTTCAGACAATTTGTCAGGAGTTTCACCAGGATCCATATGGATATTCTCTCATGAAGCAACAGCCGAATTTCATACGGATTTCATCAACAATTTGAATGGATTCAGAGCAACATATGAAGCTGAAGATCTCCGCAGTCTTTCTAATGAGAATAAGATTAGCTGCTCTTTTGAAGAAGGGATGTGCTACTGGAAACAGGACCACCCCGATACTGAAGGCTGGATACGAGTCAGTGGGCCAACACTTCCCCCTTTCTCTGGACCCACGTTTGATCACACCTTTGGGAATCAGTCTGGATACTACATCGTCACACCAGGAGGCCCTGGTAACCAGATGAGAAACTTCAGGATTTTCAGTCTTCCATTAGATGCTGCAAATCAGCCTACTTGTCTGAACTTCTGGTACCATATGTATGGAAGTGATGTCTTCAGGCTGAGAGTTTCCACTTCTACAACACAGAGTGAAGCGAACATCATATTTGAGAAAGAGGGAAACTATGGTGATGACTGGCATTATGGGCAGGTCACACTGAATGACACTTCTGGCTCGATAATTGTTTTTGAAGCCCAGAAGAGCAGGGGTCTGAGAAATGATATAGCTCTGGATGACATACGGCTGTCAAATGGCCCATGTGTAGATGGAGTCCATCCAGAACCTACTCTTGTTCCAACACCAACCACCCCACCTGCACAACCCACTGACTGTGGTGGGCCATTTGAACTGTGGGAATCAAACTCTACTTTTAGCTCTCCTAATTAtccaaataattatatcaaCAATGCCTCCTGCATTTGGCATCTTCATGCAACTAGAGGCAAAAACATTAGGTTGCACTTCTTTGACTTTGAGTTGGAATCTATCCTGGATGTGGTGGAAGTCAGAGATGGATTGGATGATAACTCCACACTACTGGATGTTTATACTGGCCGAGGACCATTTGCAGATGTGATATCAACAACCAATCACATGACAGTGTTCTTCACAACTGACAGATCAGTAACCATGAAGGGATTCCATGCAAACTTCACCTCTGTTTCTCAAAGTGACAGGCCTGAGCCATGTGCTCCTGGTCTCTATCACTGTTCCTCTGGAGAATGCATATCAGACATAGATGTTTGTAATGGACACCTGGATTGTCCTGATGCTTCTGACGAGGCCAAGTGTGtgcaCCACGTGAATGATGGGAAAATGCAGCTCATGTTTCAGAATAAGTGGTACACAGTCTGTGGAGAGAATTGGTCTGGAGGTCTCTCTACATTTCTGTGTCAATATCTTGGGTTTCGaagTGGCAATGCAACATTGGTTCCCATTGTTAACAGAAATGATTCATTCATAACTGTTAGCCAGGCAGGGAATGGCAGTTTCGAGCTTACTCCCagCAGAAATGTCAACCCCATGGACTGGGAGGCGGTGATCGGGCTTCACTCACAGTTATCTTCTCATAACACAGTCCGACACATCGACCGCATTGTGATGGACCCCCGATACAACAAGAGAACAAAGGACAGTGACATTGTTTTGATGCACCTGGACTCAAAGGTGAACTTTACAGAGTACATTCAGCCAATTTGTCTTCCTGATATTGAGCAGCAGTTTCCAATGGGAAAGATGTGTTTCATAGCAGGGTGGGGAAGAATGGAAGAGCAAGgttcTTTGGCGAATATTTTACAAGAAGCTACACTACCTCTCATAACCAATGTGAAATGCCAACAGCGTATGCCTGAGTATACTATTACACCAAGGATGATGTGTGCTGGCTATGATGAAGGAGGAATTGACTCCTGCCAGGGGGACTCTGGAGGTCCTCTGATGTGCCTGGACAATGATAGATGGGTGCTCGCTGGTGTGACGTCTTTTGGCTATGGATGTGCTCGTCCAGAACGGCCCAGCGTATATGTCCGTGTCACAGAGTTTGTTGATTGGATAGAGGATACACATCACTAGACACAAAGGATTCGATTGGTTAATCCTATTTGCTCATGTTGGCAGCCATATAGTTTCTGTATACTTGGCGTGCATTATGTTTTGGATTTTCAGTGCACTACACATCACAATCAATGTCTTAGGAACATTTCTGAGAACTAAGCTTCATGTGTCTTCTGACTGCCTGTACTAACTGGTTCTTAAATCATCCAGGAGCTACTTTTTCTGAAGTGACTTTTGTTTCTTAcactaagggccggattaaatcaaaactttgacccacctgctaatagcaaactacaaacctgtacatcatagatGTACATACATCacatacatttatgattagaaaaattgtcatcttactaaaaatgaagccgcaactgattacagttctgtagttttctattagtggttgggtcaaagttttgatttaatctggccctaaatGTATTTCCTGCTGTTTGCAGAAAAATTGTTGTACATGTTAACATGATGCAATTCAGTCGGctctgattaaaaaacaaaaaaagacccTTATACTTATATGGCAATTAGGACTAAGGTGTATGTTATAATTCTGCtcttattgtattatatttcttgtCATAATTGGTAATGTATGAAACGGATGAAAACAATGCCTTAAAAAGATGCTGAAACAGTTTGTCAGATACTCTTTATTTCAACCACGCATAAGGATTAAGTCATATGTACAAATCACAATAACTttttactgaaaaaaacaagtcaaaaaGTATTACTACTAAATAGTGCAGTCTGACTCATGGCTTTACGTTTCTAGCAAGCACAgtcttaaaataacattttgtgacACATTCTTATTtgtaattctgttttaattctgttcatttttttttctctttaattatgCAAAATGCCCatgctctttttcttttttttttgtgaaatttTAAATTGTCTGACCTTATCTCATCTGGGATTTGAAATGCctttaatcttgttttttgtgtaagtCTTAATTACTTTAATCTATTTTCAAAGTTCAAATGAATTAATCTTTGCCTTAGCTCATTTACCCATTCCAGTTTGAACCCTTAACATTTCTAAGTagaatttcttattttaatgacTTTGAAGGCAGGAGgacaaatatactgtatatattttttaatttaagagtGCTGCAGAGCAGTGATGGTGGTTAGAAAGTGTTTAACACACTGATGCTTGTCGAGCTGATATAGTAAACCTAATttctatttagattttttttattgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgataatttctttgtcagttggcaaacgtacaaaatcagcaggggatcagatacttttttccttcactgtatcaGCAGACAATTAGTGTTATAGAGAGCTGTATGCTCATTCTTAATGTAAAGCCTTGAGGTAAAGTCACACTTACAATATATACAAGTGTGGAGCTGAACACATACTAGGTGAAGAATGTGAAAGTAAGTGTGCCCAATGCATATTACCAACTGTATGCAAATGTTTAgttcagatttgtttattttgccttGATTCAATCATTTTCACAGGGGATCTCCCATTGACAGGATGTACACTTTCCCTTAGCAACTTACCAGGATTGTAATTTGTATCAGCTTCTGAAATGAACACCAGTAAATTCTCAATTGCAgcttatttgaaacaatatggaatataatgaaaacaaatatgctttATTCTGGTATGtgcttttcttgtatttgttaatatgcTAAGGTTTTTATGGTTTCCTTCAGGCATGTACTGATAAAGAGGAAAAAGTCTAAATGGAACAATTATGGCAGAATGTAACTGGAACCTTAACATATCATGCGTTACCTCAAAATGAGACACCCTTAATATCCTGTTTAACTATGAAAGGAGAAAGCATGTGTGGTTCTTTAAAACTTTTGCAGTACATAATTGAGCTTTGTTAAACAATATGTCCTTTTATCCAACAAAAACATACTTACAGCCATAACAATAAAGTGGAAAATAGTTTGCATGCATGAGTTTTTCTTTAAGGACGATTTGTTTAGACAGCCGTACACTATTAAACCACAGACTCTGTGCCTGGTCATACGAGTTAATGATCTTTCAAATTTCACAAGTCTCTGCCCTAAATGATCTGGCTTATCAGTAAGACAGCCTTCGTTATACCCTGTGTTTTTTAGGGCTTGTGTTCTGATACCATTCTCATGACTTTGTTGGTAGGTAAAGCATCACTTGGATAAAAGtctagtgttttgtttttgttgttttttgtttttgtgatttcaAGGTTACACTTCCatgctgttttctttcttggatGTCTTTGATATCCAGAGCGTTGACTGGTTCGGATTGGTTTTCGTCCGAGGTTTGctataaaaaagaaaccaattGGACTCAAAATCTGTATCATCTGTGCGtcattgttattaaaattaaaggaCATTCGGAAATCATTCTGTGACCCCATGAACGGCTtgcaaataaagaacaaaagacT

Function

GO: NA

KEGG:

id description
K01316 TMPRSS15, PRSS7; enterokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12722 lncRNA upstream 86714 200279 ~ 201116 (-) True G10214
TU12743 lncRNA upstream 157356 270921 ~ 271523 (-) True G10229
TU12748 lncRNA upstream 209064 322629 ~ 323000 (-) True G10233
TU12826 lncRNA upstream 1419836 1533401 ~ 1533655 (-) True G10298
TU12836 lncRNA upstream 1583240 1696805 ~ 1705596 (-) True G10307
AMCG00016013 mRNA upstream 36036 149601 ~ 153973 (-) True AMCG00016013
AMCG00016012 mRNA upstream 46141 159706 ~ 181537 (-) True AMCG00016012
AMCG00016010 mRNA upstream 73514 187079 ~ 196898 (-) True AMCG00016010
AMCG00016018 mRNA upstream 1149970 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016020 mRNA upstream 1200214 1313779 ~ 1341211 (-) True AMCG00016020
TU12954 other upstream 2596834 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 2920857 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 3415687 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 3794194 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 8077981 8191546 ~ 8194432 (-) False G11326

Expression Profile