RNA id: AMCG00016016


Basic Information

Item Value
RNA id AMCG00016016
length 363
RNA type mRNA
GC content 0.65
exon number 3
gene id AMCG00016016
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 789186 ~ 799369 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACACTCATTATGTACGACGAGGGTCAAGATAAGGAGGACTCCCCGCCCCGGATCGTGGAGCACCCGTCTGACCTGATCGTGTCCAAGGGGGAGCCGGCCACCCTCAACTGCAAGGCGGAGGGCCGGCCCAGCCCCACGGTGGAGTGGTACAAGGACGGGGAACGGGTGGAGACGGACAAGGATGACCCACGCTCTCACCGCATGCTGCTGCCCAGCGGCTCGCTCTTCTTCCTGCGCATCGTGCACGGCCGCCGCAGCAAGCCAGATGAGGGCAGCTACGTGTGCGTCGCCCGCAACTACCTTGGGGAGGCCGTCAGCCACAACGCGTCCCTGGAGGTGGCCTCGCTGAACGTCTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12749 lncRNA upstream 440291 348522 ~ 348895 (+) True G10234
TU12745 lncRNA upstream 473230 294121 ~ 315956 (+) True G10230
TU12729 lncRNA upstream 546104 225223 ~ 243082 (+) True G10218
TU12684 lncRNA upstream 588184 200290 ~ 201002 (+) True G10185
TU12789 lncRNA downstream 398260 1197629 ~ 1197883 (+) True G10263
TU12871 lncRNA downstream 1451057 2250426 ~ 2250627 (+) True G10342
TU12874 lncRNA downstream 1457944 2257313 ~ 2257732 (+) True G10345
TU12882 lncRNA downstream 1567262 2366631 ~ 2416786 (+) True G10352
TU12888 lncRNA downstream 1625716 2425085 ~ 2425481 (+) True G10356
AMCG00016014 mRNA upstream 519266 257227 ~ 269920 (+) True AMCG00016014
AMCG00016009 mRNA upstream 567302 205890 ~ 221884 (+) True AMCG00016009
AMCG00016008 mRNA upstream 696336 69832 ~ 92850 (+) True AMCG00016008
AMCG00016017 mRNA downstream 156279 955648 ~ 996162 (+) True AMCG00016017
AMCG00016015 mRNA downstream 210419 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016021 mRNA downstream 1372340 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016025 mRNA downstream 1773200 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016030 mRNA downstream 1969906 2769275 ~ 2812231 (+) False AMCG00016030
TU12879 other downstream 1513229 2312598 ~ 2313159 (+) True G10350
TU12903 other downstream 1686173 2485542 ~ 2487751 (+) True G10371
TU12970 other downstream 1959978 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 1959978 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 1959978 2759347 ~ 2761719 (+) True AMCG00016030

Expression Profile