RNA id: AMCG00016017


Basic Information

Item Value
RNA id AMCG00016017
length 1861
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00016017
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 955648 ~ 996162 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTATGACATTAAGGACGATTACATGCTCCGCATTAAAAAGGCTTTTAGCAGTGATGAAGGCACTTACACCTGCATAGCTGAGAACCGTGTGGGCAAAGTGGAGGCGTCAGCGTCACTCACAGTCAGGGCACCTCCTCAGTTTGTGGTCAGGCCAAGGGACCAGATTGTGGCTCAGGGACGAATTGCCACTTTCCCCTGTGAGACCAAAGGCAACCCTCAACCGGCCGTGTTCTGGCAGAAGGAAGGCAGCCAGCCCCTGCAGCCTAGCAGCAGATTTTCCGTTTCCCAAAGTGGAGATCTAACCATCTCTAACGTACAGCGCTCAGATGCAGGCTACTACATCTGTCAGGCCCTCACCGTGGCTGGCAGCATCTTAGCCAAGGCCCAGCTGGAAGTTACTGATGTGCTGACAGACAGGCCCCCACCCATTATTCGCCAAGGCCCAGCCAATCAGACCCTCGGTGTGGACAGCTTGGCCTTACTGAAGTGCCAGGCATCAGGAGACCCCATCCCTACAATCAGCTGGTTGAAGGATGGGGTGAGTCTGCTGGGCAAGGACTCCAGAATGTCTCTCCAGGACCTTGGCAGCCTACAAATTAAGAACATACGGTTATCTGATTCTGGTATATATACCTGTGTCGCTGCGAGCTCCAGTGGGGAAACATCCTGGAGTGCCTTTCTTGAAGTGCGAGAATCCACTGGTGTTACAGTAACCAAGAATCATGATGCCACTGAGCTTCCAGGCCCTCCCTCCAAACCCCAGGTCACTGATGTCACAAAGAACAGCGTCTCTTTGTCCTGGCAACCAGGACTGACCGGGGGATCACCCATCACTTCCTATGTCATAGAGGCTTTTAGCCAGTCAGTGAGCAACAGTTGGCAGACAGTCGCAGACCACGTGAAGACCACACTCTACACTGTCCGAGGACTTCGGCCCAACACCATATATCTGTTCATGGTGCGAGCTGTGAACACACAGGGCCTGAGTGACCCCAGTCCAATGTCTGAACCAGTGCGCACCCAAGATATCAGTCCCCCTGCCCAGGGAGTTGACCACCGACATGTGCAAAAGGAGCTGGGGGAAGTGATTATTCGGCTGCACAACCCTGTCGTTCTCAGCCCCACAACCATTCAGGTTACTTGGACGGTTGACCGGCAATCACAGTTCATTCAGGGCTATCGAGTGCTATACCGGCAAACCTCAGGACTGCCCTCTCCCTCGAGCTGGCAGAGTCAAGATGTCAAAGTGCCAACGGAGAGGAGCATTGTGCTGTCCAGCTTGAAGAAGGGCATAATTTATGAGATCAAGGTCCGCCCCTATTTCAACGAATTCCAAGGAATGGACAGTGAATCCAAGTCTGCTCGCACCACTGAAGAAGCACCGAGCGCCCCCCCGCAGTCTGTCACGGTCCTGATGGTGGGGAATCACAACAGCACCAGCATCAGCATCTCCTgggaccccccacccccagaccACCAAAACGGGATCATCCAGGAGTACAAGATCTGGTGTCTTGGCAACGAGACCCGCTTTCATGTCAACAAGACCGTGGATGCTGCGATTCGCTCCGTGCTCATTGGAGGCCTCTACCCTGGAATCCAGTACCAGGTGGAAGTGGCGGCCAGCACCAGCGCTGGTGTGGGGGTGAAGAGTGAACCCCAGCCCATCAGCATAGGCAACATCAGGGATGTCATTGTGAGTGGAGCTGGGAGCAACAACAGCATCACCGAGCAAATCACAGACGTGGTCAAGCAGCCTGCCTTCATCGCTGGCATCGGAGGGGCCTGCTGGGTCATTTTGATGGGATTCAGTATCTGGCTCTACTGGCGCCGAAAGAAGCGAAAGGGTCTCAGCAACTAC

Function

GO: NA

KEGG:

id description
K06754 ROBO2; roundabout, axon guidance receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12749 lncRNA upstream 606753 348522 ~ 348895 (+) True G10234
TU12745 lncRNA upstream 639692 294121 ~ 315956 (+) True G10230
TU12729 lncRNA upstream 712566 225223 ~ 243082 (+) True G10218
TU12684 lncRNA upstream 754646 200290 ~ 201002 (+) True G10185
TU12789 lncRNA downstream 201467 1197629 ~ 1197883 (+) True G10263
TU12871 lncRNA downstream 1254264 2250426 ~ 2250627 (+) True G10342
TU12874 lncRNA downstream 1261151 2257313 ~ 2257732 (+) True G10345
TU12882 lncRNA downstream 1370469 2366631 ~ 2416786 (+) True G10352
TU12888 lncRNA downstream 1428923 2425085 ~ 2425481 (+) True G10356
AMCG00016016 mRNA upstream 156279 789186 ~ 799369 (+) True AMCG00016016
AMCG00016014 mRNA upstream 685728 257227 ~ 269920 (+) True AMCG00016014
AMCG00016009 mRNA upstream 733764 205890 ~ 221884 (+) True AMCG00016009
AMCG00016008 mRNA upstream 862798 69832 ~ 92850 (+) True AMCG00016008
AMCG00016015 mRNA downstream 13626 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016021 mRNA downstream 1175547 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016025 mRNA downstream 1576407 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016030 mRNA downstream 1773113 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016034 mRNA downstream 1939793 2935955 ~ 2946364 (+) True AMCG00016034
TU12879 other downstream 1316436 2312598 ~ 2313159 (+) True G10350
TU12903 other downstream 1489380 2485542 ~ 2487751 (+) True G10371
TU12970 other downstream 1763185 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 1763185 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 1763185 2759347 ~ 2761719 (+) True AMCG00016030

Expression Profile