RNA id: AMCG00016020


Basic Information

Item Value
RNA id AMCG00016020
length 798
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00016020
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 1313779 ~ 1341211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTGCCAACCCCCCCGTGGGCACCCAGAGCCCACCATCTCCTGGAAAAAAGACGCCGTGCCCATCGATGACAAAGATGAGAGAATCACGATCAGAGGAGGAAAGCTGATGATCACAAATGCACGGAAGAGTGACGCTggaaaatatgtgtgtgtgggcacCAATATGGTGGGAGAGCGGGAGAGCGAGATTGCCGAACTCACTGTGTTAGAGCGGCCTAACTTTGTGAAAAAGCCCAACAGCCAGGTGGTCCTGGTGGACGACAGTGTGGAGTTCAGATGTGAAGCCAGAGGAGACCCTGTGCCCACAGTGCGGTGGAGGAAGGAGGATGGAGACTTGCCCAAAGGAAGGTTTGAGATTCGTGATGATCACACACTGAAGATACGGCGGGTGACAGCGGCTGATGTGGGCTCCTATACCTGCGTGGCAGAAAACATGGTGGGCAAGGCTGAAGCCCCGGCCACCTTGACAGTCCATGTACCTCCAGCCTTTGTGGTCCGTCCCCGAAACCAGGTTGTGGCTGTGGGGAGGACTGTGACATTCCAGTGTGAGGCCACAGGCAACCCCCAGCCAGCCATCTTCTGGCAGCGAGAGGGGAGCCAGAATCTGTTGTTCTCCTACCAGCCCCCTCAGCCGTTAAGCCGGTTCTCCGTCTCCCAGAGTGGGGATCTGACTATCACGGACGCAGAGAGGTCAGACGTGGGATACTACAGCTGCCAGGCTCTGAATATCGCCGGGAGCGTCATCACCAAGGCCCTTCTGGAAGTCACCGATGGTAAAGTGGGGTCAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12748 lncRNA downstream 990779 322629 ~ 323000 (-) True G10233
TU12743 lncRNA downstream 1042256 270921 ~ 271523 (-) True G10229
TU12722 lncRNA downstream 1112663 200279 ~ 201116 (-) True G10214
TU12826 lncRNA upstream 192190 1533401 ~ 1533655 (-) True G10298
TU12836 lncRNA upstream 355594 1696805 ~ 1705596 (-) True G10307
TU12843 lncRNA upstream 502717 1843928 ~ 1844160 (-) True G10314
TU12848 lncRNA upstream 566714 1907925 ~ 1908294 (-) True G10319
TU12850 lncRNA upstream 577218 1918429 ~ 1919336 (-) True G10321
AMCG00016018 mRNA downstream 1694 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016010 mRNA downstream 1116881 187079 ~ 196898 (-) True AMCG00016010
AMCG00016012 mRNA downstream 1132242 159706 ~ 181537 (-) True AMCG00016012
AMCG00016013 mRNA downstream 1159806 149601 ~ 153973 (-) True AMCG00016013
AMCG00016011 mRNA downstream 1200214 90982 ~ 113565 (-) True AMCG00016011
AMCG00016019 mRNA upstream 117861 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016023 mRNA upstream 1121860 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016022 mRNA upstream 1178332 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016024 mRNA upstream 1191406 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016026 mRNA upstream 1254803 2596014 ~ 2600477 (-) True AMCG00016026
TU12954 other upstream 1369188 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 1693211 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 2188041 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 2566548 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 6850335 8191546 ~ 8194432 (-) False G11326

Expression Profile