RNA id: AMCG00016022


Basic Information

Item Value
RNA id AMCG00016022
length 3493
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00016022
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2519543 ~ 2527277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGACTAGCTCTGTTGAAACATTTGCAAGTTATAACTTTCGTTCTGTTTCGCAATTAATTGTGTATAATTGATCAACATTTGTAAAAGACTACAGATTTTTGCCTTTTGCTGCATGTTTTGGCGAGCGTAGCCTTCTCTGTCtgtacttcctgtttatttgagACATTCAGTCTGTGACAAAGACAGCTGAGTGtgaaattaaagacaaatataCCACAATTAAGGGGGTTTCGCTGCGGTATTGCTGAAAAGGAACATATGAATCGATTATGGTAGGGCTATGAGCGATAAGAAAACTAATGCAGGGGGTGCATTACAGGAATTTTGACCATAAGGTTTGTTACAGTCATCGCTTTTGGAGGGTGAAAgagttgttttaaaaacacccagcgtaatacatgtttttcttaatgCTAAGGCTAACTGTCTGAAGTCAAGATTGGTTTCTGACCTGACGACAAAAACGAAACTGCAGGACGTGTCGTAACCCCACTGTTGGCGAGTTCGGCTCTCTGAGACCAAGATGCTGGCGCTGAAGgtgctgtgtgtgctgtatcTGGCCACTGTGTTTAACCATGCTCCGTTTGGGACAACATACCCTGTCCCAGAAGaacattacttaattgaatccgAAGGGATACTGAACAATTTAAGGGCTCACATAGGATGGCGAAATCTAACCTGTCCGCTTTGCAAAGCCCTATTTGCTGCGGTCGACGTCGCACTTTGGAGTGAGAAGAACGAGGAGCGGGTGGCGGCCTTAGCTGCCAAGGTGTGCATCCAGTTACACCTGGCTGACCATAAGGTGTGCACTGATATCACGGAGCTCTTCAAGAGCGATCTCCTCTCTGTGTTACTAAGGTCTTTCCTGCGGCCTGACGAGGTGTGCGCTTTGCTGGTGGGCCCTGACTGTGGCCACTTTGACATCTATTCCTCCTGGAATGTTAGCTTGCCACAAGTACCTAAGCCTCCGGTGGTGCCTCTTTCTCCACCTAAACCAGGGGCCCCCACAAGCAGGGTGCTCTTCCTCACCGACGTGCACTGGGACCATGACTATGCTGAGGGAAGCAATGCTGAATGTAAGGAGCCTCTGTGCTGCCGTAATGAGTCGGGCTCCCCACATTGGCACCAAAGGGGTGCTGGTTACTGGGGCTCCTACAGTAAGTGTGACCTTCCCCTGCACACTGTGGAGAATCTCCTTCAGCATGTTGCAAGCACTGGCCCCTGGGACTGGGTCTACTGGACAGGAGATATCCCTGCTCACAACATCTGGGCCCAGACTCGCAGCCAGCAACTGTTGGAACTCAGTGGTATCACCCAGCTGATTCGCAAGTACCTGGGTAACATACCGGTATACCCTGCGGTGGGCAACCACGAGAGCACTCCCGTCAACAGCTTCCCACCACCTTTCATCCATGGCAACCGCTCCTCGACCTGGCTGTATGACAGGATGGCAGAGGAGTGGAGTGCCTGGCTGCCCCCACAGGCGCTGCAGACTCTCAGGTGGGGTGGATTCTACAGTGTGGAGGTCCAGCCTGGGCTACGCATGGTCTCCCTCAACATGAACTTCTGCGCCCATGAGAACTTCTGGCTTCTCATCAATTCCACTGACCCAGCAGACCAGCTGCAGTGGCTCATCGGCATCCTGCAAGAATCTGAGAACAATGGGGAAAAGGTGCACATCATTGGTCATATTCCACCCGGCTTGTATGAAAGCACCATCACAGGACAGTTTTTTGGACACACGCACTTGGATGAGTTCCAGATGTTTTATGATGAAGAGACCCTGAGCCGCCCATTGGGAGTGGCCTTTATTGCTCCTAGTGTAACCACCTATGTCAACCTCAATCCAGGTTATCGCATGTACTATGTGGATGGCAATTACTCTGGCAGCTCCCGCCTGGTTCTGGACCATGAGACACACATTCTGAACCTGACGGAAGCCAATAACCGCACTGCTTCTCCCAGGTGGAGATTGTTGTACCGGGCGCGGGAGGCCTATGGACTGGAGACTTTGTTCCCTGCCGACTGGGATGGGCTCATTAAAACATTCCTCCAGGATGACCGTGCTTTCAAGAACTTCTGGTACCTGAACCACAAGGGCCATGTGTCTGAGCCCTGCAAGGACACTTGCAAGACTACTGTCCTCTGCTTCCTGCGTAGTGGCCGCAGTGGAGACCCACAGCTCTGCGACAGCCTTGGCTCAGCTGTGCCCTATGGGGACATTGTAAAGAGCGTGAAACTAAGGGCTATGTGTTGATGACCTGTGATTGATTGTGATCGTATGACCACAAGATCAATTatgatcaatttaaatttagaaGTGACAGATTCTGATATTCTAATAATTGTCTAACTGCACTTGGTAGATAATGCTGTATGAATACGTAATTGATTCATGGGTGGCTTCTGGTAAACCTGAAAAAATCCACTGATttatgatttactttttttttttttttctgctcacCCTGTTCCAGTTTCAGGCTGATATCACTGTCTGACTGATTAGAGATTTGCATTGGGGTTGAAAGACCGCCTTCCCAATCCACCCAACATGTGCCTGCCTTTCAATAGGTTTTTACTTACGTTTTTAGGATTTGAACAAGCTATAACAAGTGTAAAACAGGAAAACGTGTACATGTACACCAGATGAATCCTTACTTGATgcattgcactttttattttattttgtcttgtgggagtacatatttttaaaattttggaTGCAGAATGTGTAGTTTATTATTGCAAATTAAACTATGAAACACTTTATAATTTGTATCTAGTTTGATAGAAAACGTTTTTATAAAAATAGTAGCAGTACTCGTAGTACCACAGATGCCTAAACCTGCTGTACAATTATTTAGCCAaatcaatttccattttaattgctgtttttgcagAACATGACTTATGTTACCCTACATGATAAACTCGGGGTATGTTAAACCATCCTCAAATTAAACTAGTTATCTTCATTAAAACAGAATcacttcatgtttaaaaaaacaaacaaacaaacaaacaaacaaaaacggtTTGTGAAAACGGTTTAGAAACTTTAGTGGTATCCagatttattgtttaattgtattatgagCTTTAATGTccgaaaacaaattaaagtaacattattttaatttagtagtgtgtgtttgaatcctataaacaattaatgtaatagttttttttttttttttttttcctgcttctacAAATGCAGTTTGATATGTAGCTTGATATTTAGCTGGCAATGCACACAAAATATGGAAAACATCTTGTACACATCAacaataattgcttttaaatgtgttgggTACCTGAATTTCACTCacattatatttcactttgcatagttttatttgtaaacatgtaGGATAACTGATTACATGTATTTGGAAGTGCAACCTGAtttttgttcttcctttttTAACCACAACaacgttttatttaatttctgtatatggtaatttattgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K12350 SMPD1, ASM; sphingomyelin phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12889 lncRNA downstream 94063 2425021 ~ 2425480 (-) True G10357
TU12875 lncRNA downstream 261828 2257416 ~ 2257715 (-) True G10346
TU12872 lncRNA downstream 268902 2250401 ~ 2250641 (-) True G10343
TU12853 lncRNA downstream 431993 2087271 ~ 2087550 (-) True G10324
TU12850 lncRNA downstream 600207 1918429 ~ 1919336 (-) True G10321
TU12929 lncRNA upstream 6064 2533341 ~ 2534076 (-) False AMCG00016024
TU12949 lncRNA upstream 169392 2696669 ~ 2702512 (-) True G10415
TU12966 lncRNA upstream 208904 2736181 ~ 2736474 (-) True G10432
TU12969 lncRNA upstream 222381 2749658 ~ 2749864 (-) True G10435
TU12977 lncRNA upstream 238217 2765494 ~ 2767457 (-) True G10440
AMCG00016023 mRNA downstream 4463 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016019 mRNA downstream 1059711 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 1178332 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016018 mRNA downstream 1207458 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016010 mRNA downstream 2322645 187079 ~ 196898 (-) True AMCG00016010
AMCG00016024 mRNA upstream 5340 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016026 mRNA upstream 68737 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016027 mRNA upstream 79431 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016028 mRNA upstream 187692 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016029 mRNA upstream 257875 2785152 ~ 2793446 (-) False AMCG00016029
TU12954 other upstream 183122 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 507145 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 1001975 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1380482 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5664269 8191546 ~ 8194432 (-) False G11326

Expression Profile