RNA id: AMCG00016023


Basic Information

Item Value
RNA id AMCG00016023
length 2160
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00016023
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2463071 ~ 2515080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCTGGAGAAGCCATCGGACCTGGCTAATGAGAATACCTGCCTGCCGCCCTCCTTGACTCTGAATCTGCGCTCCCCCCACAGTGTCTTGCTAAACGCCGAGGTGGGCAAAGGCACCTCCTCACCCAAGAGTCACCACATCTACGCCTCCACAGACCTGCAGGCCACCATGGGGCTGGAGCAGCCCAATGATGAACCCTCCAATGAGCTGGCCAAGCgtaaggaggaggagagggccAAGAACCAAGAGAATGAGCAGGGACACAAGCAAGCCCCCAACGAGCCCGCCAATGCCAAGTGGGTGAAGGAAGGCCAGAACCAGTTGCGCAAAGTGGCTGAGAAGCAGGATCTGAACCGCAACCCCCCAATGGAGGAGAAGAATGTCTCCACCAAGGGCTTCCTCTCCCTCTATCCTGCTACTCTAGACCTGGAGCTCTCAAGCAAGAATTCTGCCAACCAGCCCCTGGTTATCGACACCTCACAGGTGCCAGAGGGGAAGGGGGGCAGGGaagagacagaggaggaggaagaagaggatgaGGCACCGGTTACCGGGGAGAAAGACACAGACTCATCctcagagacacagagcagCAGCGAGTCGCGGAAGGACAGCTCCAAAAATGCCTGCCTCTTCTTCCGGACAAGGAACATGGCTCCCAGTGATGAGGATTCAAGCTGGACCACTCTGTCTCAGGGCAGCACTACCAACAGCACCCCTGATGGTGACTCAGAGTCTTTCTGGAACCGTAGTGCCTTTGAGACAGACACTGACCTGCCGGCGGGCTGGATGCGGGTTCGAGACACTTCGGGGACTTACTACTGGCACATCCCCACTGGTACCACCCAGTGGGAGCCCCCCTCTCCTCTGGAGGAGGGCCAGGGCTCGGGCAGGCCCTCCAGCACATCTCCAGGGATCACCCCCTCTGAGGAGCAGCAGCTGACCTGGACTGGTCTATCTCGCCCTGACAAGTTTGAGGACGGGGAATTTTGGAAGGACCTGCAGGCAGATGATGTGTCCTCAGACCGCAGCTTGAAGGAGTTTGAGGGAGCAACACTGCGCTATGCTTCCATCAACCTAAGCTGCTCGCAAACAGAAGAGGAAGACAAGCTGGGCTCGATCACCACTGATGTGGAAGCAAAGTGTTTTGCAGTGCGCTCTCTGGGCTGGGTGGAGATGTCAGAAGAGGACATGGCTCCGGGCAAAAGCAGCATCGCAGTCAATAACTGCATCCGCCAGCTTTCCTACCACAAACACAACCTGCACGACACAGCAGGCATCTGGGGAGAGGGTAAAGACATGCTGCTCGTCCTGGAGAATGAGACCCTGAATCTGATTGACCCCCTTGGCCAGACGCTGCTGCACTCACAGCCAATCGTCAGCATCCGTGTCTGGGGTGTGGGCAGAGACAACGGGAGttttacacCTGTCACAGGGAAACTACAGCATAGGTTTTTCAATGTCACTGGAATATCTTCCTCTATAATATCTTTTGGCGAACACCACAGCTTCTATGGAGTGGAGATGGATAGTGTGAAGGTGGACACAGTGACTGCAGTACACTACCTCTCCCTGTGTCCCAGAttgcagcagaaaaaaaaaacaggaaacagaaaaaataagaGTATGGATATAATAAATGTGGCTTTAGAAGCGGTGCTTCTTTCCAAAGACAAAAATGAGTGGATGCCAGTGACGGTCAACGTGGCTTCAGCAACACTCACCGTCATTGCTGCAGAGACAGAGGAGGTGCTGTCGGAGTGCCGTGTACGCTTCCTGTCCTTCATGGGTGTTGGGAAGGACGTCCACACGTTTGCCTTCATCATGGCAGAGGGCCCGGGGAACTTCATCTGCCACATGTTCTGGTGTGAGCCCAATGCCGCCAGTCTCTCAGAGGCAGTGCAGGCCGCGTGCATGCTCCGGTATCAGAAGTGTCTGGATGCGCGGCCCCCCagcaccagctccagctcctgcCTCCCGGCTCCACCTGCCGACTCTGTAGCCCGCCGAGTGGGGTCCAGCGTCAAGAAGGGAGTCCAGAGCCTGCTTGGGAGCTTTAAGCAGAAACGGGCAGGAGCCCAGACCCCGACCTCTGGCTGGACGGTGGCAGTGGCCGGGACCTCTAGCTGGGCGGACAGGGTTACCTACAACCCCTAC

Function

GO: NA

KEGG:

id description
K04529 APBB1, FE65; amyloid beta A4 precursor protein-binding family B member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12889 lncRNA downstream 37591 2425021 ~ 2425480 (-) True G10357
TU12875 lncRNA downstream 205356 2257416 ~ 2257715 (-) True G10346
TU12872 lncRNA downstream 212430 2250401 ~ 2250641 (-) True G10343
TU12853 lncRNA downstream 375521 2087271 ~ 2087550 (-) True G10324
TU12850 lncRNA downstream 543735 1918429 ~ 1919336 (-) True G10321
TU12929 lncRNA upstream 18261 2533341 ~ 2534076 (-) False AMCG00016024
TU12949 lncRNA upstream 181589 2696669 ~ 2702512 (-) True G10415
TU12966 lncRNA upstream 221101 2736181 ~ 2736474 (-) True G10432
TU12969 lncRNA upstream 234578 2749658 ~ 2749864 (-) True G10435
TU12977 lncRNA upstream 250414 2765494 ~ 2767457 (-) True G10440
AMCG00016019 mRNA downstream 1003239 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 1121860 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016018 mRNA downstream 1150986 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016010 mRNA downstream 2266173 187079 ~ 196898 (-) True AMCG00016010
AMCG00016012 mRNA downstream 2281534 159706 ~ 181537 (-) True AMCG00016012
AMCG00016022 mRNA upstream 4463 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016024 mRNA upstream 17537 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016026 mRNA upstream 80934 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016027 mRNA upstream 91628 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016028 mRNA upstream 199889 2714969 ~ 2715852 (-) True AMCG00016028
TU12954 other upstream 195319 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 519342 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 1014172 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1392679 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5676466 8191546 ~ 8194432 (-) False G11326

Expression Profile