RNA id: AMCG00016024


Basic Information

Item Value
RNA id AMCG00016024
length 4839
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00016024
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2532617 ~ 2554946 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGATGACCATGGCTTCAGCCCACTGCATTGGGCGTGTCGGGAGGGACGCTCTAACGTTGTGGACATGCTGATTATGAGAGGGGCACGCATCAATGTCATGAACCGTGGAGACGATACGCCCCTCCACCTCGCCTCCAGTCATGGCCACCGCGACATCGTCGGCAAGCTCATCCAGTGCAAGGCCGATACCAACACTGCCAACGAGCATGGGAACACGCCGCTGCACTACGCCTGCTTCTGGGGTCAGGACCTTGTTGCTGAGGACTTAGTAAATAATGGAGCTCAGGTCAGCATCTGTAACAAATACGGGGAGACACCCATGGACAAGGCCAAGCCACACCTGAGAGAGCTTCTGAAAGAACGTGCTGAGAAACTGGGACAGAGCCTGACCAAGGTCCCCTATAAGGACACGTTCTGGAAGGGCACCACTCGAACACGTCCACGTAATGGAACCCTAAACAAACATGCTGGGATTGATTTCAATCAGCTGTCATTGGTTTTAAAGCTCAATGAGAACCATTCTGGAGAGCTGTGGCAGGGGCGCTGGCAGGGCAATGAGATCGTGGTGAAGGTGCTGAAAGTGCGAGATTGGACCACACGCAAGAGCAGGGACTTCAACGAGGAGTATCCCAAACTCCGGATATTTTCCCATCCCAATGTGCTACCCATGCTGGGTGCCTGCCAGTCCCCACCTGCCCCCCACGCCATCATCATCACACACTGGATGCCCTATGGCTCACTCTACAATGTGCTGCATGAAGGGACAAATTTCGTGGTTGACCAGACTCAGGCAGTAAAGTTTGCTCTGGACATCGCCTGTGGGATGGCTTTTCTACACACATTGGAGCCCATGATCCCCCGACACTATCTCAACAGCAAGAGTATAATGATTGACGAGGATATGACCGCTCGGATCAGCATGGCAGATGTGAAGTTTTCTTTCCAGTGTCCTGGAAGGATGTACTCTCCAGCATGGGTTGCACCTGAAGCACTGCAGAAGAAGCCAGAGGAGATCAACCGGCGCTCGGCGGACATGTGGAGTTTTGCGGTTCTGTTGTGGGAGCTGGTGACCCGAGAGGTGCCCTTCGCTGACCTCTCCAACATGGAGATCGGCATGAAAGTGGCCCTGGAAGGATTGCGACCCACAATTCCCCCAGGCATTTCACCCCACATCTGCAAGCTAATGAAGATCTGTATGAACGAGGATCCTGCTAAGCGGCCCAAATTTGACATGATTGTCCCCATCTTGGAGAAGATGCAGGACAAGTGAACTGCACCCTCTTTTCTCCTTCCctcttgccccccccccactcgCAGTTCAAACCAGTATTGCCTTAACTCTCACTACCACTGCTCTCAATGCCACTGTAACTTGCGCTTGAACCAGCGGCACTTATATACCTCAGCCGCTCTTGAAGAAAGCATTATTTTACACACCCCCCTCCTGCGAACCCAATAATGAAGCCGAGCATACAACTTTAACGCCCCCACCTCCTGTCTAATGGCTCCTGTCTGACTTGAGTAGCCACAAAACCTGACTTCACAGAGCCACCTCCAGTCAATGGGATTATACTGCTCTTCAGAAAACAGGCACATAGCTTAATGTATTCTGAAGGCTCACCAATAAAGACTGAGTCCTATTTCTTAACATCTCTCCACAGATGTCATACAAAAGCCAATTAAATGGAGGAAATGACCGCTTGCACTGTGCTTGCTCACTCCCAGTAAAGTTTTTCTCAGCTTCTTTATCTCTGCCAACTTCACCAGTGACTAACCTGTTCCACCAGGTAGCACTTAGGATTGTATCCCACTGCTGTTTAAGACTGTTATGGTCAGACCAGTTGATAGATTTACAGATCTACACTAATAATTCCCAGCAGACACGGGGAGACCTGAGTCAGCTCTTCCTTTGAAGGAATCCTAAAAGCCATCAAGCATTTACATAAAGAGAAGAATTACAATGTAGGTCCTTAGTCCTAAAGTAATAGGCAGCAGCATGGTGTAGTGGTTTGAGCTCTGGAATTGTAACTGGATCCAGGAATCAAATCCCCAGTGAGACTCTGAGGATATACCCTTGAACACAGTACTTAATTTAGGGTGCTtcaatgaaaactaaattttataaatgtgaattaatGAAATTATGGTAGTGATGAAAAAATACTCATTGGGCAATCCTATCCTTCCcacatgagaaaacaaaaatggaataGAATGCCTGGTTATTCtggtgtaatttaatttatagttaCTGTACTTGGCAGGGAGTTTCTTTGGTAACAGGTATATTTACAAGTTATttgtatcatatttttttaagatgacaGATTGGACAGTTGTAGCCGGGGGATGAGGGCTCCAGTTTCAAGGTGGTCTGGTCAAGTCATCTTAAGACTTGCTCTGTGCAGCTCTGCTCCGGTGCTCAGTTTTGGTTCTCACATTAGCAGGTTTTCTCTAccccattttgtttgttttcactttcataaagtacttttttccccagcttgaaggaaaacaaagcatgtcttatacaaatgtatgtaatttatatataagaatattaaaaaaatactaaaaaaaaaaaagtttgtgctTTCCATTGTAAACTGGAGGCTGTGCATTTTATATGAAACTCGGCTGTGTTTATCAAATAATACCCACACCTCCATGCTTTCCTGTAGTGCTGTCCTTCACAAAACATTTGATCCCTTGAACTTGGatcttttattaaaacacatctaTTCTTATTTCACTGTGCAGTTTGGGATTTCATTCTGGTCTTTTTCTAACCTTTTTATGAGGATATTAttgaaatggatttaaaaagtagtttggggcacacaaatacatatttgtctACTATGACAAATTACATCTTCATATGCAGGCATCAAGTAACCAAGAtcacataattaataatttgtaattttgtagaAACCCAAGACAAGGAGAGAGTTTCTAAGGTGTAGCTCTTGATAAGGACATAAGGTCATTGATACATGTGTATACAAGGTCATTCTCAGGATACATGAAAGGGTAATCTAACCAACTATATTTAGTAGATAAATATACAGAATCTGGAACCCAGACTGTTTTTATGAAGAATAACTTACTGACCTTTGAGGTTTTAAACTCTTGAATTGAACTCTATCAGTGGTGCTGTGgccaagataataataataattcataattaatccCCTTGATAACTCAGGGAGGTGCTTTTCAATCTTTAATTTCCAGTGCATTATAatgcagttaattaattaataaattattattcatggGTAGACATTTCATGATCACACACAAAGGTATATACcattaactaaataaattaataaatagccTATCCAATGGGAGTAGGTAAAAGTTAAGATTTTTTGTACATAAAACCAGTCTAGTTTTTCAAAATGCCCTTTTTTCTCTTCGCTTAGACAACATTAACTAATTCCGTCACCCTCTCAAAACAAGaatggtgtttgtgtttctcatttaaaatacatccatgGTTTATATAGGACTGTTTCACCCAGCTTGGaatttttccatattttcacAACCtgaaatttataaaaatataaaagacatGGTTAGAGGTTACATCGTGGTTAAATGTCATGGTATTCACCcctcaatacttggtagaaacACCTTTGGCAGGAATTGTAGCGCTGTGTCTTTTGGGGTAGGGTTTTCTCTGTTTGCACATTGTTCAATATTCTCCCATTCTTCATGGCAAAAATTTTCAAGCTGTGTCAAGTTGGATGGTGATCATTGGTGGACAGTAATCTTCAAGTCTTGACAAAGATTCTCAATCAGATTaaagtctgggctttgactaggccactctaggacattcactttcttgcttttaagccactccagtgttgctttggctgtgtgcttggggttaTTGACCTACTTACTGTTTGTATACCCCTCTCTTGATCTGTGcatttccacaactttatcctgcaattgttttgaaagctccttggtgttGGCATTTTAAAAGGTGGAACTCCGCCTCTGACACAGGGGTGAAGTGGAGCCGGGCGGAGCGGTGCTACTCATTCAATCCCATGCTCCTCAAttctgaatataaaaaaaaaataattaaaatgtatttaaaacatttccttgcgtgatttttacatcatttactTGAGTGTTTGGTTTGACACCGGTCCTTCTGTGGGCTGTTTTTCTTGACCACATAAATGATCCAAACGTGCACATGCATCGCTCATCGCAGCAGCTACTGCCTAACAAAGCAgagctgcttgtgtttttttaatttaatttacaaattgtaaTGGCGGTTTACCATGCcatgcaaataattacatttaccaatttaaattaacattaacaccGTTACTAGGATGCAGCAGGGAATAGGCCTACTGGGAAGCTAAACCCCCTCTTCCTACTACACCCTATAAAACCAGGGGAGCGCTAAAGGACACCACTCATGCAACACACATGCAATATAATTCCCAGAAGCACAGAATGTATCAAAGggatttagataatattcagtaatgggacgacacctggcagattaaattccatgtggaaaagtgcaaggtgttacatgcaggtaacaaaaatgtccactataattactctatgtgaggaatagaactagatgaagtaacacaagagaaagatctaggagtcttaAGTCTCACTTTCTCCATgtaaacaatgtggggaagcaatataaaaggcaaacagaatgttagggtatattatcagaagtgtagaatttagaacaagggaagactgtacaatgcactagttagacctcatctggaatactgtgtacagttctg

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K06272 ILK; integrin-linked kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12889 lncRNA downstream 107137 2425021 ~ 2425480 (-) True G10357
TU12875 lncRNA downstream 274902 2257416 ~ 2257715 (-) True G10346
TU12872 lncRNA downstream 281976 2250401 ~ 2250641 (-) True G10343
TU12853 lncRNA downstream 445067 2087271 ~ 2087550 (-) True G10324
TU12850 lncRNA downstream 613281 1918429 ~ 1919336 (-) True G10321
TU12949 lncRNA upstream 141723 2696669 ~ 2702512 (-) True G10415
TU12966 lncRNA upstream 181235 2736181 ~ 2736474 (-) True G10432
TU12969 lncRNA upstream 194712 2749658 ~ 2749864 (-) True G10435
TU12977 lncRNA upstream 210548 2765494 ~ 2767457 (-) True G10440
TU12994 lncRNA upstream 229179 2784125 ~ 2846357 (-) True AMCG00016029
AMCG00016022 mRNA downstream 5340 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016023 mRNA downstream 17537 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016019 mRNA downstream 1072785 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 1191406 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016018 mRNA downstream 1220532 1263535 ~ 1312085 (-) True AMCG00016018
AMCG00016026 mRNA upstream 41068 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016027 mRNA upstream 51762 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016028 mRNA upstream 160023 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016029 mRNA upstream 230206 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016041 mRNA upstream 908720 3463666 ~ 3475993 (-) True AMCG00016041
TU12954 other upstream 155453 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 479476 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 974306 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1352813 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5636600 8191546 ~ 8194432 (-) False G11326

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_11338304_11348212.mRNA False 1450 mRNA 0.50 10 CI01000304 11338019 ~ 11348212 (-)