RNA id: AMCG00016025


Basic Information

Item Value
RNA id AMCG00016025
length 3822
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00016025
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2572569 ~ 2596847 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGATCTTCTTTTCTATGGTCTTTTTTCCTAGACATGCGTAGTCAAGAAGTAAGCATGGCTACCGTTTTATTATTGAATGGCGATACACACGTGTGATCAATTTGGAAAGTAGAAAATATTTGTCTTAACAACCTATCGGCCTGTAAGGTTGACGGAAGTATTGCTGTTGTCAGGAGTCACTGTGAACCAGGATGTTCGCAGAGGAGGAATGGACCGATGGCCCTACAGAGCAGGAACTGACTAAATCTGCCTTGCAGCGACAGGGACTCTCGGATAACAAAACCTTTGTAGCTCAGGGTGTGGGGAAGAAGAGCCTCTTGCGGACACTACAGGCTCTTGGCTCAGTTCCAGACTGGAGTGGCAATGGAGAAGGTGGCTGCAGTGACAGTGAGCCTGAGGAGGCCCCGCTGGCagccaagaaaaagaaaaagagagttCGCAAGCGCCCACTGTCTGACAGGACAGAGAGCAGTTGCACAGGAAAAGGGAAGGGGCCAatggataaaaagaaaaagatagagTCTGGCCACCAAAAGGTGGGCAAGCCGAGAGTACTGGGAGCTGGCCTGGGCAAGGgtggaaatgtaatatttccagTGCCAGTAGAAGGAGAGGCGGGGAAGGAAGAGGGACAGTGCAAACTCAGCCGGCAGCAATGGAGgaacaaaatgaagaacaaaaggAAGAGTAAAAACAAGTTTTGTCCAAACAGGGAAACAAGCCCAGCCAAagcagaggagaaggaggggtcAGAGAGTAAAGAGCACTCCACGACCCCAAGTACAACCCACCCAAAGGTCAAAAGCAGTAAACCAAAGAAGGGGCCTGAAACCATTGGAAGTAAGGAgaagaatgaaacaaacaaagaggaGTTGATTCTGGTTAAAAAAGGCTCAACTTCTAGTAGGGTTGCCATCAAACATGGGTTAAAAGTCAAAGCCTCAGATTCTCAGCTGGCTGAAGATGTAATAAACACCTTGGCACAGGAGGATATCCGAGCCAAGAAAAGGAGGCAGGAGGTGAGAAGACAGCAAGGCAGACTGCAGAGGTTGCGCAGGGTGCTGGAGTCGGACGCCACTTTGGCAGCCAGGGGAAGCTGTgcagaggagaagagagaggagggggaggaggagaagcaAGAGGAGGTGAGCCCCTCCCAGTCTGTGCCTGGGCGCTCGGCAGCCCTGCGAGCACGTATGGAGCTGCGCTTGGAGTCGGCGCGCTTCCGCTACATCAACCAGCAACTCTACACCTCCTCCAGTCTGGAGGCACAGCAGCTGTTCCGTCATGACCGCCAGGCCTTCGAGATCTACCACCGGGGCTTCACTGCCCAGGTGCAGCGCTGGCCCAGTAACCCTGTGGACTCCATCATCAGCTACATCCACAACAAGCCTGCTTCTTTGGTGGTTGCAGATTTTGGCTGTGGAGACTGTAAGATAGCGCTCAGTGTGAGGAACAAAGTGCACTGCTTTGACCTGTCTCCCATCAACAACCTTGTCACTGTCTGTGACATGGCCAATGTCCCTCTTCAAAATGACTCGGTGGATATCGCtgtattctgtctctctctcatgggAACCAATATCAGTGATTTCTTGGTGGAGGCTAACCGCGTGTTGGTAATGAGGGGTGTCCTGAAGATTGCTGAAGTAGCCAGCAGGTTCCAGAATGTTCGAGGGTTCATCAACGCATTGTCCAGTCTGGGATTCAATTTGATGTCAAAGGACACTGAGAACACCTACTTCTACACCTTTGATTTCATGAAGACAGGGGAACCTGAGTGGAACACCAAGAAAGCTGGTCTGGAACTAAAGCCCTGTGTGTACAAGAAGAGGTGAGGACTTGGGAAGATCAATCAATGTGAAACCCAAAGGAGTCTACAGGCTGGCTGAAGACAGCacaccacaaaaataaatggaaaattattaACTACTTCCAAAGCTACCCAGAAATAACAATGCCTCTCTCTGCAACTGCACATACAGCTTCAAATTGCTACTAAACCTACACAATCACCCgtgattttattaatgaaaccatcctgcagtataaatatttgtatttattgaggAATTGACATTTaagcaaaatgcaaattatagaCATTGACAAATTCTAGTAAAGGTTTATTAAAGTCTTACAAAATGTAGTTCaaactaaaattatatatattttaatgtctttgtgtACTATATTATGAAATGTACTACTTATCTAGACTGATAAACTGTCAGCTGTGATTTGAGTGCTGAAGTGTCAGGGAATGCGTTGGTGTTATACCACACCCACCCACCATCTAGTAAGTACATTACCTCATATATGAACTGTTCTCAACAAAGTGAGGcttgttggattggaccacttAGATTAATGTGATATGTGTTATGGAGAGTTGTCTTTTATTATCCTGCCAATACTTAATAGaactatattttataaaggAGTGATAAGGATTATGCTGAATAATACACAgtgttcatttaataaatacttttacttGCATTGACTTGTTTTAAACTATTGAAAGTTCTTCCTCGCctttaaagaaaaggaaatgcttATTATGAATCTGCTCCTACAGAAAATAGAGTTTAGAATTAGAATTTAAAAAGATCAGAACCTTCAGTCAAGCATCACACCCCACTTAAAAGTGAGCAAGACACACAATCAGCAGTAGACTTGGGGTTTGCAAACTTGCATCTTGGATATCATAAAGGTTGGAATATGGTTCCAATGTGGTTTCGCTGCAGAGAGCAATTGCATGGTGATACAAAATCGGAACACGAATAAATCTCTTAATTGACAAACCATTTCCTCTgttagaaatattattattaattaatattattaatattatttagtaTGTAGGATTTGATTCATGGCTGCTTTAACTGttacgtttttattttgttattttgactaACCAACTAAAAACTGAGTTTATGTGTAATAAGTCTAGGTTGTGCTATTAAAAGATACCAGTTTGTTAACATTTGGTCTGAAGCGTGCTCATGATTCGCACTCGCCTCAGTGTACAGAGTATGGGGTCAAGCTTGGCCATCAGGGGGATGTGAGTGATGATGTCGTTGTCCCTCaggctgtctctctctgtggctgtTCCTAGATAGACAGGGCAGTGGTACAGTGGAGTAGAGGAGAGACTGTCTGCCTCTCTGGGGAGCTCTGTCTCAGCCCTGAGCCACACGATGGGCAGCGTGCATGGCTTGGGTGACAGTGTCTCTTGGACAACGCCCAGGCGAGTGTCCCACAATGCGTTGTGCAGCTGCAGGCCTGTGATGTAGGCCCCGCTGTGTGGGGGAGATGATGGATGGAAAGTGCTGCTCATGACCTGTGTAGAGAGGAGAGGTGCtttctcaacacacacacacacacaagtgcagCAGAGATCCCATTAGTCAGCCTAGACCAGTTACTCTAATCAACACACTGGGGAGCACAAATGTAAAGTTCTCGCACCTGCCAGGCAACAATGCACTCTTTACATTCACCAGCcacaatgtgttgttttatattgatatgtacatttatttatttggttccTAGATTTATGAAAGCTTTGATGAAAGTAACTGGTCTGTCTCAATGTTAGGTTTTTGTCAGCTTTTATGTATGTTGGAAACAAATGCCAAATATGTATGTGAAATGTGCCAGCTTCATTTTCcctaatgaaagaaaaagcacaatGTTATAATTTATCTCTATGCAGATGCCCTGATGTAGGGTGTTGATTTGTGAATGAAAACTCAAAATTATTCAGCTGTGGCCAATTCTCTACCATGACTTAAAGGTTTAATAGGTT

Function

GO: NA

KEGG:

id description
K14850 RRP8; ribosomal RNA-processing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12921 lncRNA upstream 28957 2541724 ~ 2543612 (+) True G10389
TU12904 lncRNA upstream 82885 2488761 ~ 2489684 (+) True G10372
TU12888 lncRNA upstream 147088 2425085 ~ 2425481 (+) True G10356
TU12882 lncRNA upstream 155783 2366631 ~ 2416786 (+) True G10352
TU12874 lncRNA upstream 314837 2257313 ~ 2257732 (+) True G10345
TU12953 lncRNA downstream 113566 2710413 ~ 2710752 (+) True G10419
TU12955 lncRNA downstream 117897 2714744 ~ 2716077 (+) True G10421
TU12957 lncRNA downstream 120039 2716886 ~ 2717183 (+) True G10423
TU12965 lncRNA downstream 139325 2736172 ~ 2736476 (+) True G10431
TU13018 lncRNA downstream 439337 3036184 ~ 3036419 (+) True G10479
AMCG00016021 mRNA upstream 203089 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016015 mRNA upstream 1537347 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016017 mRNA upstream 1576407 955648 ~ 996162 (+) True AMCG00016017
AMCG00016016 mRNA upstream 1773200 789186 ~ 799369 (+) True AMCG00016016
AMCG00016014 mRNA upstream 2302649 257227 ~ 269920 (+) True AMCG00016014
AMCG00016030 mRNA downstream 172428 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016034 mRNA downstream 339108 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016031 mRNA downstream 401019 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016032 mRNA downstream 401836 2998683 ~ 3054898 (+) True AMCG00016032
AMCG00016033 mRNA downstream 458161 3055008 ~ 3060444 (+) True AMCG00016033
TU12903 other upstream 84818 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 259410 2312598 ~ 2313159 (+) True G10350
TU12970 other downstream 162500 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other downstream 162500 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other downstream 162500 2759347 ~ 2761719 (+) True AMCG00016030
TU13312 other downstream 1830299 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 4057865 6654712 ~ 6661668 (+) True AMCG00016079

Expression Profile