RNA id: AMCG00016026


Basic Information

Item Value
RNA id AMCG00016026
length 954
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00016026
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2596014 ~ 2600477 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAGGTTTTAGAGCAGAGAGTGCAGCGGTTGCTATGTAGCACTGACCCAGTACTGCTGGGTTTCAGTGCAGGGCTGGCCGGGGAGCTGATACGGCACAGGAGTCAGACCCTCAGCCGCCTGCTCCTGGAGTCTCAGGGCTCCGGGCTACGCCTACAGCCTCCCCCACTTACCATCGACCTTGGGGAAGCCAGGCAGAAGCTGCAGGCGCTGTGGGAGAGCCTGGGCCTGAAGAGAGAGTGCCGGAGGTCTGGGGCTCAGGGACCTTTGTATCAGTTCATGCAGCAAGAGTGGAATAGGATCAGCTCTCTGGTGTCAGCCCTTTTGGCTGATCTCAGTTATGCCAAAGACTGTGGTGTGGTGACCCAGGTGGCACACAGAGGACCCCTTGATTCTCCTCAGCTCCTGCCCCTGCTGTCCCAGCTGGAATCCCAGGTTGGGCTGCTGAAGGGCTACCTGTTTGGGGAAGCTCCCCCTGCTGCCTACCACCTCTCTGCTTTCCACAACTCCAAGGGCTTCCTGGTGGCCCTGTTGTGGGAGAGGGTGCAGGCTGAGCAGAGGGACATCAGTGAGTTTTCCCTGCAGTACCAGGTCATGAGCAGCACTTTCCATCCATCATCTCCCCCACACAGCGGGGCCTACATCACAGGCCTGCAGCTGCACAACGCATTGTGGGACACTCGCCTGGGCGTTGTCCAAGAGACACTGTCACCCAAGCCATGCACGCTGCCCATCGTGTGGCTCAGGGCTGAGACAGAGCTCCCCAGAGAGGCAGACAGTCTCTCCTCTACTCCACTGTACCACTGCCCTGTCTATCTAGGAacagccacagagagagacagcctGAGGGACAACGACATCATCACTCACATCCCCCTGATGGCCAAGCTTGACCCCATACTCTGTACACTGAGGCGAGTGCGAATCATGAGCACGCTTCAGACCAAATGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12929 lncRNA downstream 61938 2533341 ~ 2534076 (-) False AMCG00016024
TU12889 lncRNA downstream 170534 2425021 ~ 2425480 (-) True G10357
TU12875 lncRNA downstream 338299 2257416 ~ 2257715 (-) True G10346
TU12872 lncRNA downstream 345373 2250401 ~ 2250641 (-) True G10343
TU12853 lncRNA downstream 508464 2087271 ~ 2087550 (-) True G10324
TU12949 lncRNA upstream 96192 2696669 ~ 2702512 (-) True G10415
TU12966 lncRNA upstream 135704 2736181 ~ 2736474 (-) True G10432
TU12969 lncRNA upstream 149181 2749658 ~ 2749864 (-) True G10435
TU12977 lncRNA upstream 165017 2765494 ~ 2767457 (-) True G10440
TU12994 lncRNA upstream 183648 2784125 ~ 2846357 (-) True AMCG00016029
AMCG00016024 mRNA downstream 41068 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016022 mRNA downstream 68737 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016023 mRNA downstream 80934 2463071 ~ 2515080 (-) True AMCG00016023
AMCG00016019 mRNA downstream 1136182 1459072 ~ 1459832 (-) True AMCG00016019
AMCG00016020 mRNA downstream 1254803 1313779 ~ 1341211 (-) True AMCG00016020
AMCG00016027 mRNA upstream 6231 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016028 mRNA upstream 114492 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016029 mRNA upstream 184675 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016041 mRNA upstream 863189 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 897225 3497702 ~ 3502851 (-) True AMCG00016042
TU12954 other upstream 109922 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 433945 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 928775 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1307282 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5591069 8191546 ~ 8194432 (-) False G11326

Expression Profile