RNA id: AMCG00016029


Basic Information

Item Value
RNA id AMCG00016029
length 405
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00016029
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2784125 ~ 2846357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGAGGCACGTTCTGAAGTGGCAACCGCTGCAGTCAGCagtgaaacacagagacaggaagTTCCAGGTCCACCAGCCAGGGAAGAGGGACCTTCCTCTAGCTACAGCAACAGGGAAAGACAAGACGGTCCCATGTCTCCTCCACTATCAGGCACCACACAAAGCAGTCTTGACTTATGTTCCAGGAGCTGACCAGGCATCTGTCACAGCACGCACCAACATCCAGCTGGCCCAGGCACAGGTAGAGGACGTGAGGCGGCTGTCTTTGGAAGCTGAGATGAAGCTGGCAGAGGTGAAGGTAGAAGAGATCAAGAGAACTGCAGAATATGCCACATCTGAGAAGGCTGGGGAAGATGTGATTGTGGAGGAAGAAGTCCCTGACGCATACCTACGAGAAGACTAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12977 lncRNA downstream 17695 2765494 ~ 2767457 (-) True G10440
TU12969 lncRNA downstream 35288 2749658 ~ 2749864 (-) True G10435
TU12966 lncRNA downstream 48678 2736181 ~ 2736474 (-) True G10432
TU12949 lncRNA downstream 82640 2696669 ~ 2702512 (-) True G10415
TU12929 lncRNA downstream 251076 2533341 ~ 2534076 (-) False AMCG00016024
TU13003 lncRNA upstream 79778 2873224 ~ 2963628 (-) True G10464
TU13002 lncRNA upstream 125465 2918911 ~ 2963628 (-) False G10464
TU13013 lncRNA upstream 184551 2977997 ~ 2978208 (-) True G10474
TU13023 lncRNA upstream 246925 3040371 ~ 3047869 (-) True G10483
TU13026 lncRNA upstream 291857 3085303 ~ 3085537 (-) True G10486
AMCG00016028 mRNA downstream 69300 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 113443 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 184675 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 230206 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016022 mRNA downstream 257875 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016041 mRNA upstream 670220 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 704256 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 735396 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 829472 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 990088 3783534 ~ 3784496 (-) True AMCG00016045
TU12954 other downstream 74467 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 240976 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 735806 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1114313 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5398100 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 8053388 10846834 ~ 10847811 (-) True AMCG00016176

Expression Profile