RNA id: TU12994


Basic Information

Item Value
RNA id TU12994
length 1291
lncRNA type sense_over
GC content 0.37
exon number 2
gene id AMCG00016029
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2784125 ~ 2846357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NttgcattaatgagaaattgaacaggtgttcctaataatccattagGAGCTGACCAGGCATCTGTCACAGCACGCACCAACATCCAGCTGGCCCAGGCACAGGTAGAGGACGTGAGGCGGCTGTCTTTGGAAGCTGAGATGAAGCTGGCAGAGGTGAAGGTAGAAGAGATCAAGAGAACTGCAGAATATGCCACATCTGAGAAGGCTGGGGAAGATGTGATTGTGGAGGAAGAAGTCCCTGACGCATACCTACGAGAAGACTAAATGCTTGACTTGATGTTACATTTGTTGAAAAAGGTGGTCTGGTTTATGGGGcatcagattttaatttttttcatctcttgacTTACAGCCACTTAATTTCGAACACGAGCAACCACAGCTTAGCTGGTGTGCCTCTTGTTTGAAGAGAGCAAGGTTTGGAATTATCACTTAAAGTGATGGAGAACCTCAAGAGAAAATAAGTTTATCATAATACccaatttttttgtatttatttatttaaactgtctCTTGTGGTGGCACCCAATGTCAATCTATAACATTACTCTCCCTAAGTTACACAGTTGTGCCCAGTGTACCTAAAGCTTATCTCCTTTACTAAGATCTTAAAATTTGACATGacataattaataatgcttttttattgCAAAGCTGGAAGTAAATTCTAAAGGGTTTAATAGAGTTGACCTCACATTGCTGTCTGGGCACACTAGCTATTTATAATTAAGTCACCTGGGGAAGAAGAGTATTCAATTATGCTTGTGAAGTTTcatccataataatacattccaTGGAGAGGATAAAGCTGACTTACACTAGCAGCAGCACTGGTctaatatgtatgtaattttagggtgtaattgtttgtttaattattctaGTAATGATGTATGCAGGGAATGATTTTTGAAATGTTCATAACAGCAATTGCCAAACAATTACATTAGTTAGATGTAGTCTTAGTGTGACAGCTTTTCACTATAAATCAGAGGATGATAATGCTGCAACATATTATCTTTGGTTTTTGGGGTTACAGGAATAAACTATCTAGGTTAAAGGTCGCTTTCGAACACTATCTCCCCTATGAGCATTAAAAAGTGTTACCTGtgaaatcaaatacatacagatcTGTTGGTCATTTCCCCCAGTTTAGTCtagattgtattattgttttaatatataatcttGCAGTTTAAAGTTATTTTGTGGTGGTCTAGTTCAATAAGTTGCATCCATGAATAATATTTCTGatgtctgattttatttttataaatgggTATATTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12977 lncRNA downstream 16668 2765494 ~ 2767457 (-) True G10440
TU12969 lncRNA downstream 34261 2749658 ~ 2749864 (-) True G10435
TU12966 lncRNA downstream 47651 2736181 ~ 2736474 (-) True G10432
TU12949 lncRNA downstream 81613 2696669 ~ 2702512 (-) True G10415
TU12929 lncRNA downstream 250049 2533341 ~ 2534076 (-) False AMCG00016024
TU13003 lncRNA upstream 26867 2873224 ~ 2963628 (-) True G10464
TU13002 lncRNA upstream 72554 2918911 ~ 2963628 (-) False G10464
TU13013 lncRNA upstream 131640 2977997 ~ 2978208 (-) True G10474
TU13023 lncRNA upstream 194014 3040371 ~ 3047869 (-) True G10483
TU13026 lncRNA upstream 238946 3085303 ~ 3085537 (-) True G10486
AMCG00016028 mRNA downstream 68273 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 112416 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 183648 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016024 mRNA downstream 229179 2532617 ~ 2554946 (-) True AMCG00016024
AMCG00016022 mRNA downstream 256848 2519543 ~ 2527277 (-) True AMCG00016022
AMCG00016041 mRNA upstream 617309 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016042 mRNA upstream 651345 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016046 mRNA upstream 682485 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 776561 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 937177 3783534 ~ 3784496 (-) True AMCG00016045
TU12954 other downstream 73440 2710399 ~ 2710685 (-) True G10420
TU13017 other upstream 188065 3034422 ~ 3035183 (-) True G10478
TU13149 other upstream 682895 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 1061402 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 5345189 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 8000477 10846834 ~ 10847811 (-) True AMCG00016176

Expression Profile