RNA id: AMCG00016031


Basic Information

Item Value
RNA id AMCG00016031
length 420
RNA type mRNA
GC content 0.48
exon number 1
gene id AMCG00016031
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2997866 ~ 2998285 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGATTCCATACTGCATCAGCATGAGGAAATCTCCACATTACTGGTGACCAATAACCAGTATGAAAGAATTGTGCAGATCAATGCAAACACTTTGAAAACAGTGGTTGCGTTCCTCAAGTTATTCAAGGATGCTACTAATGACCTCGAGTCTGACAACTccactcccagcacatcacttGCGCTGCAGTGGTCCGTCAGACTCATTGAACACTGCCAAGCAGCATCCCTCGATCCCTTGCTCTCCGAAGTCACCAGTGTATGTGCCTCACGTCTGGAAGAACTGATGGACACTAGTGACACATCAGCAAAACCCCTCCACATGATGTACAGGATTGCAACGCTCCTGACCCCTAAAATGCAATTGCTACGGATGATGGGCTTAGATGCAAGAGACGACGTGGTCAAAGGTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12965 lncRNA upstream 261390 2736172 ~ 2736476 (+) True G10431
TU12957 lncRNA upstream 280683 2716886 ~ 2717183 (+) True G10423
TU12955 lncRNA upstream 281789 2714744 ~ 2716077 (+) True G10421
TU12953 lncRNA upstream 287114 2710413 ~ 2710752 (+) True G10419
TU12921 lncRNA upstream 454254 2541724 ~ 2543612 (+) True G10389
TU13018 lncRNA downstream 37899 3036184 ~ 3036419 (+) True G10479
TU13027 lncRNA downstream 97691 3095976 ~ 3096205 (+) True G10487
TU13073 lncRNA downstream 282126 3280411 ~ 3281165 (+) True G10528
TU13092 lncRNA downstream 373266 3371551 ~ 3371894 (+) True G10547
TU13106 lncRNA downstream 439789 3438074 ~ 3443096 (+) True G10560
AMCG00016034 mRNA upstream 51502 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016030 mRNA upstream 185635 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016025 mRNA upstream 401019 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016021 mRNA upstream 628386 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016015 mRNA upstream 1962644 1009788 ~ 1035222 (+) True AMCG00016015
AMCG00016032 mRNA downstream 398 2998683 ~ 3054898 (+) True AMCG00016032
AMCG00016033 mRNA downstream 56723 3055008 ~ 3060444 (+) True AMCG00016033
AMCG00016036 mRNA downstream 149503 3147788 ~ 3164940 (+) True AMCG00016036
AMCG00016037 mRNA downstream 190414 3188699 ~ 3189951 (+) True AMCG00016037
AMCG00016035 mRNA downstream 252402 3250687 ~ 3259152 (+) True AMCG00016035
TU12970 other upstream 227196 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 236147 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 236147 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 510115 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 684707 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 1428861 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3656427 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 3665801 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 6069996 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 6101135 9099420 ~ 9100036 (+) True G11509

Expression Profile