RNA id: AMCG00016032


Basic Information

Item Value
RNA id AMCG00016032
length 876
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00016032
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2998683 ~ 3054898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGTTTGACCTGGTCCCGGCTGCAGCAGAGGATGAGCCACCACCAGCCAAAAAGCAAAGCTCCTCTGACCGATTCACATACTGGAAAGACGTCGATGCTGAAATAGCTGAATATCTCAGCACCCGACTCTCGGACAACCCAGACCCAGACAGTAGGAAGTACCAACTCTCTGCCTTGCCCAAGCAGATAATCGATCTCCCACCAACGCACAAGCACCCCCCTGAGTATACAGAGAGAGCCGTGTCCATCCCACTGACTGTCAACCAGATGCATGTACCAGGAACAGAGATTCCTGAATTCCTTGGACACCTAGGCAGTTTGGACTTTGAAGTAGAGTCGCGTCGAACTCAGTTGGTAAACGACACTACGATGCAACTCGAAAAAGAGTCGATAGAGGTGGTGAAAGTTATGGCTAACTTAGCACTTGCGAGCTCAAGATTTTCACAAGGACTCAGGTTGCGGCAAGTGGACATGCTACAGGAAGGCATCACTGGCAGCTCTTCCACACTGACTAAACTTGCTTATCGTCTGCGTGGAGTCTGCAAATCTGCAATTAAAAGAATGAAGAGAAGAGGTGACCTGAAAATtggaaaaagacacaaaattgttttgattgatgAAAGCAAATGTGGCCACAAAAGAAagtACAACCGCGGAAGACAGAGCAACAGGAAGTCATGGGTGTTTGGAATGCTTGGGGTTAAAGAGGAGAGCAGAAGACCCATTGTGAGAGTTGTCAGTCAGCGTTCAGCTCAACACGTCATGCCAATTCTCCAGAAGCATGTTAGACAAGGAAGCACTGTTGTCTCAGATGGGTGGAGAGCCTATAACTGTCTCGGAGATGCTGAATATAACCATCTAACTGAACCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12965 lncRNA upstream 262207 2736172 ~ 2736476 (+) True G10431
TU12957 lncRNA upstream 281500 2716886 ~ 2717183 (+) True G10423
TU12955 lncRNA upstream 282606 2714744 ~ 2716077 (+) True G10421
TU12953 lncRNA upstream 287931 2710413 ~ 2710752 (+) True G10419
TU12921 lncRNA upstream 455071 2541724 ~ 2543612 (+) True G10389
TU13027 lncRNA downstream 41078 3095976 ~ 3096205 (+) True G10487
TU13073 lncRNA downstream 225513 3280411 ~ 3281165 (+) True G10528
TU13092 lncRNA downstream 316653 3371551 ~ 3371894 (+) True G10547
TU13106 lncRNA downstream 383176 3438074 ~ 3443096 (+) True G10560
TU13131 lncRNA downstream 463990 3518888 ~ 3519591 (+) True G10584
AMCG00016031 mRNA upstream 398 2997866 ~ 2998285 (+) True AMCG00016031
AMCG00016034 mRNA upstream 52319 2935955 ~ 2946364 (+) True AMCG00016034
AMCG00016030 mRNA upstream 186452 2769275 ~ 2812231 (+) False AMCG00016030
AMCG00016025 mRNA upstream 401836 2572569 ~ 2596847 (+) True AMCG00016025
AMCG00016021 mRNA upstream 629203 2171709 ~ 2369480 (+) True AMCG00016021
AMCG00016033 mRNA downstream 110 3055008 ~ 3060444 (+) True AMCG00016033
AMCG00016036 mRNA downstream 92890 3147788 ~ 3164940 (+) True AMCG00016036
AMCG00016037 mRNA downstream 133801 3188699 ~ 3189951 (+) True AMCG00016037
AMCG00016035 mRNA downstream 195789 3250687 ~ 3259152 (+) True AMCG00016035
AMCG00016038 mRNA downstream 285767 3340665 ~ 3364028 (+) True AMCG00016038
TU12970 other upstream 228013 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 236964 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 236964 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 510932 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 685524 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 1372248 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3599814 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 3609188 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 6013383 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 6044522 9099420 ~ 9100036 (+) True G11509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_02191463_02196322.mRNA True 2046 mRNA 0.45 5 CI01000092 2191156 ~ 2196570 (-)