RNA id: AMCG00016042



Basic Information


Item Value
RNA id AMCG00016042
length 374
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00016042
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3497702 ~ 3502851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGTTTATGAGGATGAAGACGACAAGTTTGACAAAGGCTCATTCATGGTGCCTCGTTATTACAGTGGTGCTCTGAGGCTCGTCAACAAGGAGTTCACAGAAGAATTGCTTTCGCCCGAGTCCCAGGCGAGATTGTACAGTTCTTCTCCAGCACTGGGACGTTATTTCTCTGAAGTGGGCATGCAGTCCTTCAGTAATGGGAGCGTCACTGCACATTACTGGCTGAAGTTTATGATTCCGACACAACATGTCCAGCTAGATCGATACACACTGAGTGAGGAGGTGGTGCTCAACATTTTCCGGCAGCATCTATATGACCAGGAGCTGGAAACCGAACAGCAATTGCACATTGATCCATTATCGGTCTCTCTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13101 lncRNA downstream 119117 3378378 ~ 3378585 (-) True G10556
TU13093 lncRNA downstream 125804 3371541 ~ 3371898 (-) True G10548
TU13074 lncRNA downstream 216509 3280490 ~ 3281193 (-) True G10529
TU13026 lncRNA downstream 412165 3085303 ~ 3085537 (-) True G10486
TU13023 lncRNA downstream 449833 3040371 ~ 3047869 (-) True G10483
TU13146 lncRNA upstream 11588 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA upstream 13162 3516013 ~ 3522035 (-) False G10596
TU13179 lncRNA upstream 238742 3741593 ~ 3742262 (-) True G10624
TU13241 lncRNA upstream 366873 3869724 ~ 3912272 (-) True G10673
TU13262 lncRNA upstream 469035 3971886 ~ 3973511 (-) True G10692
AMCG00016041 mRNA downstream 21709 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016029 mRNA downstream 704256 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016028 mRNA downstream 781850 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016027 mRNA downstream 825993 2606708 ~ 2671709 (-) True AMCG00016027
AMCG00016026 mRNA downstream 897225 2596014 ~ 2600477 (-) True AMCG00016026
AMCG00016046 mRNA upstream 25991 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016047 mRNA upstream 120067 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016045 mRNA upstream 280683 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016050 mRNA upstream 320400 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016049 mRNA upstream 383447 3886298 ~ 3920503 (-) True AMCG00016049
TU13017 other downstream 462519 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 787017 2710399 ~ 2710685 (-) True G10420
TU13149 other upstream 26401 3529252 ~ 3539193 (-) False AMCG00016046
TU13237 other upstream 404908 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 4688695 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7343983 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7344080 10846931 ~ 10847811 (-) False AMCG00016176

Expression Profile