RNA id: AMCG00016043



Basic Information


Item Value
RNA id AMCG00016043
length 708
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00016043
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3606458 ~ 3615523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCTCCGCTCCCGCCGCCCGGAGCCCCAGGGATGCCTCTTCCTCCTCCGCCCCCGCCGCTAAATGTTCTTGATAACGGTCAATTGGTCATGCCCACGCCCATTCTCCCTCTCGGCCTGACTCCCAAGAAGAAGTACAAGCCAGAAGTCCAGCTCCGAAAGCTTCACTGGAACTCGATTGATGTCAAGACTCTCACCAAAGACTGCTTCTGGGCAAATCTGAAGGAAGATTGCTTTGCGAGCAAGGAGCTCTTTGCCACGAAGTCCCCGACTATCCTCTTGGCCAATTTCAAAATACTGTTTGACACGATCAAGCAGGCCATTCTGGAAGTAGATGAGGAGGTTCTCACTGAAACCAGAGTGGAGctcatCAACACTAGGTCTACTGATCTGAAACCGACCTTCCTCCACTTCCTGGTTCAGATTTGTGAGGAAAAGTACCCAGAAATGCTGCACCTCATCGAGGATCTGGAGCCTGTGGAGAAGGCCAGCAAAGAACGCAGGAAGCCTTTTGGTGCCCTGGAGGAGAAATACAAGAAGAAGGAGGCAGTGGAGAAGCTCCACAAAGCTAAGCTGCCGAAGAAGAAGGCTAAATTGGagaaggagaacaaggagaaaCAAAAGAGGAAGCAGCTCATGTGTGCAACTGACAAACACGACTTGCACGAGGTAGAAGGTGTTATGCCTGTTGTAGTTGTGGAGCTCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU13131 lncRNA upstream 86867 3518888 ~ 3519591 (+) True G10584
TU13106 lncRNA upstream 163362 3438074 ~ 3443096 (+) True G10560
TU13092 lncRNA upstream 234564 3371551 ~ 3371894 (+) True G10547
TU13073 lncRNA upstream 325293 3280411 ~ 3281165 (+) True G10528
TU13027 lncRNA upstream 510253 3095976 ~ 3096205 (+) True G10487
TU13183 lncRNA downstream 161553 3777076 ~ 3821028 (+) True G10627
TU13214 lncRNA downstream 285053 3900576 ~ 3901422 (+) True G10654
TU13265 lncRNA downstream 362036 3977559 ~ 3979097 (+) True G10695
TU13277 lncRNA downstream 593858 4209381 ~ 4209645 (+) True G10707
TU13305 lncRNA downstream 720518 4336041 ~ 4336304 (+) True G10732
AMCG00016040 mRNA upstream 19801 3581680 ~ 3586657 (+) True AMCG00016040
AMCG00016039 mRNA upstream 120524 3451415 ~ 3485934 (+) True AMCG00016039
AMCG00016038 mRNA upstream 242430 3340665 ~ 3364028 (+) True AMCG00016038
AMCG00016035 mRNA upstream 347306 3250687 ~ 3259152 (+) True AMCG00016035
AMCG00016037 mRNA upstream 416507 3188699 ~ 3189951 (+) True AMCG00016037
AMCG00016044 mRNA downstream 184066 3799589 ~ 3817285 (+) True AMCG00016044
AMCG00016052 mRNA downstream 227104 3842627 ~ 3854910 (+) True AMCG00016052
AMCG00016054 mRNA downstream 267837 3883360 ~ 3884302 (+) True AMCG00016054
AMCG00016051 mRNA downstream 333658 3949181 ~ 3966186 (+) True AMCG00016051
AMCG00016057 mRNA downstream 510967 4126490 ~ 4128878 (+) True AMCG00016057
TU12970 other upstream 835788 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 844739 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 844739 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 1118707 2485542 ~ 2487751 (+) True G10371
TU12879 other upstream 1293299 2312598 ~ 2313159 (+) True G10350
TU13312 other downstream 811623 4427146 ~ 4428059 (+) True G10739
TU13602 other downstream 3039189 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 3048563 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 5452758 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 5483897 9099420 ~ 9100036 (+) True G11509

Expression Profile


AMCG00016043 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

AMCG00016043 Expression in each Bioproject

Bar chart with 2 bars.
AMCG00016043 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.