RNA id: AMCG00016047


Basic Information

Item Value
RNA id AMCG00016047
length 3416
RNA type mRNA
GC content 0.57
exon number 23
gene id AMCG00016047
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3622918 ~ 3668558 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtCCTGCTCAGGTTCCAATGATGTCTCCAAATGGTTCAGTGCCTCCAATATATGTGCCTCCTGGATACGTTTCGCAGATTATCGAGGAGAACGGCGTGCGGCGCGTCCTGGTCTTACCTCAGCCGGAGTTCCACCCTGGGAGCCACTCGCCACTGCACCCCCCTCCTCACCCGCCCCTGCCAGCCTTCATCCCACACCCAGCCAtgatgccccccccaccccaccacatGTACTCGACCGTCAGTGGCGCTGGGGACATGAGCACCCAGTACATCCCCCAGTACCACGCACCGCACGTCTTCACGGAGCAAGACTCCCATTCCCCTCACGGAAGACCAGCCTTTGTTCACAGAGATGAAAGGACTAGTAAAACATACGAGCGTTTGCAGAAAAAGCTCAAGGAGCGACAGGGGGGCAGTCAGCCAAAAGAAAAGCCCAGCAGCCCCCCCTTGTCACCCCAAAAGAATCACTGTAGCTCCCCGACAGACATCCAGAACGGGTCCCCTGGTGCAACCACTGGGCTGGTCAAGGGCAAGCAAGTGTGTAAAATTAAAGGCAGCCCTCGGATAGACACCGAATCTGAAGAGCTCGATGAAGACTCCAAGGCCCTCCAGGCACTTCTGTCGAACATCAGCAAGCCAGTGGTGTCTGACATCCAGGCTCGAACAGTAGCCCTATCTTGGTCACCCCCTTTGGCACCTGCGAACGGAGACAGTGACGTGGCCTGCGTACCTGAGACTTTCCTGTATGAGGTCACAGTCTCTTACAGTGGGAAAGATGGCAAATTCAAAAGTGCATACAGTGGTGAAGAACTAAGTGCAACATTAGAAGACCTTCGACCTGCAACAGATTATCATGCAAGAGTCCAGGCTGTCTGCAACTGTTTACACGGGAGTCCTTCAGATGCTGTGAGTTTCACCACTCTGAGCTGTGAGCCGGACACCCCCAGCCCACCAAGGAAAACCAACGGGACCAAAAGCACACTAGTGTTGCAGTGGAAGGCTCCATGTGACAATGGATCAAAAATCCAAAACTATGTTCTCGAATGGGATGAGGGCAAAGGAGCAGGTGCGTTTGAGCAGTGCTACTATGGCCCTCAGAAGCAGTATCGAGTAACCAAGCTATCACCAGCCTCAAGATATTGCTTTCGTCTCGCAGCCCAAAATGACATGGGCATAAGCGGATTCAGCGAAGCCATCGATTTCTACACCTCAGGCAGCGTTCCTGCTACGCCCGACAGCCCCGAGCTCGTCCGCGCGGGGgtgacctggctgtgtgtgcagtggcGCCGGCCCGCAGGGTCCCCTGCCGAGGACGACATCGCCTACACActggagatggaggaggagaacTCGGGCTATGGCTTTAAGCCAAGATATGATGGGGATGAACTCGCCTGCACTGTGAAGAATCTACGGAGGAGCACAAAGTACAGGTTTCGGGTGGCGGCTTACAACTCTGAGGGCAAGAGCAGCCCCAGCCAGGCGGTGGAGCTCCACACCTGTCCCGACAAGCCTGGTGCCCCCTGCAGGCTGGCGGTAAAGGGCAAAGTTCATGCCAGCAGCTTTAAGATGGCATGGGATTCCCCCAAAGATGATGGAGGATCAGCGATCACTGATTACATTGTGGAGATGGCAGAAGGGCCTAATGGGAACAAATGGGAAAAGATATACAGTGGCTCAGTGCTGGAGTACACATGTGAGCGTCTAAAGCCAGGCTGTGTCTATCAGGTGCGGGTGTACTGCGTCAGTGAGGGAGGCCAGAGCCCGCTCTCGGAGACCCTGCAGGTTCAGTCTCTCGCAGTGCCTCCAGGTCCCTGTGTGCCCCCCCGGCTAGTGGGAAAACCAAAAGCCAGAGAGATACAGCTACGCTGGGGACATCCACAGGTCGATGGCGGGTGTCCAGTGTCCTGCTATAGCTTGGAGGTTTGCCCGGCACAGACAGAGGATTACAGGGAGGTGTTCCAGGGCCCTGAGCTGGAGTGCACGGTCATCAGCCTGCTGCCTGGGAGAACCTACTGCTTCAGACTGCGGGCCGCCAACAAGGCCGGGTATGGGCCGTTCTCTGATCGCTGCGAGGTGACCACAGCACCGGGGGCGCCGGATCAATGCAGAGCCCCCCATGTCGTCTGCAAGTCGCCCACGTGTGCAGTGGTGAGCTGGGAGGTCCCAGCAGGCAATGGTGCTAATGTGACGGAATACCGCATGGAGTGGGGGGCAGCAGAGGGCAGTATGCAGAGCTGCTACTGTGGCCCTGCTTTGACCCATGAGATGAAAGGCCTTTTGCCAGCAACCACGTACTTCTGCAGAATACAGGCGGTCAGTGTTGCCGGGGCTGGCCCGTTCAGTGACGTGGTGTTGTGTGTCACTCCCTGCTCCGTCCCTGCGGCCGTCAGCTGCCTGCAGGCCATGGAGGAGAGTGAGCTGGACAGCCCGCACTTCTGCCCCTCCACCTGCTTAGCTGTGCAGTGGGATGCACCCTGTGACCACGGGTCCGAGATCACCTCATACTGCGTGGACTTCGGAGACCGACAGCCCCTCTCGGTGGGCAGAACCACCAGTTACGTGATCGAGAACCTGCAGCCTGACACCAGTTACAGAATACGAATCCAGGCTCTGAACAGCATTGGCGCTGGGCCCTTCAGCCACACCATCAAGCTGAAGACCAAGCCCCTGCCACCGGGGCCACCACGCCTGGAGTGCACTGCCTACACCCACCAGACCCTGAAGCTCAAGTGGGGTGAGGGCCCGGCCAAGGCTCTGGCCACAGACTCCATTCAGTACCACCTCCAGATGGAGGACAGGAATGGAAGATTTGTATCCTTGTATAGAGGACCATGCCACACTCATAAAGTCCAGAGGCTCAGTGAGTCCACCTCCTATAAGTTCTGCATTCAAGCCTTCAATGAAGCTGGCGAGGGGCCctattcaaatgtttacacGTTCACTACTCCTCGATCCCCTCCTGCGCCTCTCAAAGCCCCCCGGATTGAGCGGCTGGATGACCATTCCTGTGAGGTGAGCTGGGAGGCCGTCCCACCCATGAAGGGAGACCCCATCATCTACAGCCTTCAGTCCATGATTGGGAACACAGATTTCAAACAGATCTTCAGGGGATCGGCCACATCATTCCACGTCTCTGGGCTCCAGCTGAACTGTGAATATCGTTTCCGGGCGTGTGCCATTCGCCAGTGCCAAATCCCCGGCGGGTCGCAGGACCTCACCGGCCCCTACAGTGCCACCGTCTCCTTCTCCTCGCTGAGGAACGAACTGCCTTCCAGCGGCGCCAAGAGCAGCGCGGACGCGACGCGCACCAAGCGCACACTGAGCGACGAGCAGTGCGCCGCCGTCATCCTCGTGCTGTTCGCCATCATCTCCATCCTGattgccttcgtcatccagtaCTTTGTGATCAAA

Function

GO: NA

KEGG:

id description
K24485 FNDC3; fibronectin type III domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13140 lncRNA downstream 75827 3490758 ~ 3547091 (-) True G10592
TU13146 lncRNA downstream 100883 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA downstream 100883 3516013 ~ 3522035 (-) False G10596
TU13101 lncRNA downstream 244333 3378378 ~ 3378585 (-) True G10556
TU13093 lncRNA downstream 251020 3371541 ~ 3371898 (-) True G10548
TU13179 lncRNA upstream 73035 3741593 ~ 3742262 (-) True G10624
TU13241 lncRNA upstream 201166 3869724 ~ 3912272 (-) True G10673
TU13262 lncRNA upstream 303328 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 309001 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 319095 3987653 ~ 3987955 (-) True G10698
AMCG00016046 mRNA downstream 80382 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016042 mRNA downstream 120067 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016041 mRNA downstream 146925 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016029 mRNA downstream 829472 2785152 ~ 2793446 (-) False AMCG00016029
AMCG00016028 mRNA downstream 907066 2714969 ~ 2715852 (-) True AMCG00016028
AMCG00016045 mRNA upstream 114976 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016050 mRNA upstream 154693 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016049 mRNA upstream 217740 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016048 mRNA upstream 260176 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016053 mRNA upstream 436173 4104731 ~ 4105731 (-) True AMCG00016053
TU13149 other downstream 83725 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 587735 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 912233 2710399 ~ 2710685 (-) True G10420
TU13237 other upstream 239201 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 4522988 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7178276 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7178373 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8654603 12323161 ~ 12329033 (-) True AMCG00016211

Expression Profile