RNA id: AMCG00016048


Basic Information

Item Value
RNA id AMCG00016048
length 4056
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00016048
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3928734 ~ 3947435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGGTTGGGACGGTGACGTCACTGGTGTCTGTGGGAGCGGCTGGTTTGAAATGCGAGCACCGAGTCTGATCATAAGCGAAAACAATAAAGTCTTCAGCTTCCAACGACTGGCTTACAGGACACGTCCAACGCTACTGAAAATCAAAGGTGACAGAAGCTTGAAGATTACCTGGCAAGAAGAAAAACTCAACATTTGGGAGTCCCAGTGAAGGCCATGGACTTAAGgaGGAAAGATAATGTCCAGATAAACTCCAATGTCAGCAATAAAACGAGTACCAAGTTGaaaaacaaggaaaatacgAAACCAGGAATCCAACCCAGTGAGCCAGTGTTAACCAAAGCGCCAGTCAAAAAGCAAACCCCATCTACACTTTTACTTCCTGCTGATGGTAAAAAGGGTGTGGTTCTAACAAGTGTGGATGGGAAATGTTCGGAGGGGCAGCAGGCGCCAGCAGGAGTACCAGAAAGGGGCATAAATGTGAAGCGCAGAACTTTAAGTCGCTCTTTCCTCACACACAAGAAATTTGAGCAAAAGAAGCTCATCGTAGAGGCCACCAAGGCTTCCACAAACTTGCCCCATAAACCAGTCCTGGGCTCTTACAAAGGCAAGACTGTACAGTCCAAAATTAGCTCATTTAGGCAACCCATGCACAGAGCTGCTGAATGTGAGGAGCACGGTGATGTGAAAGGCATGGTGCCAAAATCAGTGGGGCACAGACCTGGTGTAAACCCTGTAGTGTCGAGGCCGTCCACTTTGAAGCCTTCTGTGACTCTCCCTGCGAAGCCAGCTGCTGCCCACAGATCAGTGGCACACCGGCTTGCCTCTGCAGGACCCGTTcccaaacaaaaccacagaggAGTTCAGTGCTCTGCAGTCGCTAGCCGACCAGTTGCCAGCAGCACCACTGCCCGAACCATGAGCCACGTTGCCCAGCCGAAGCTCAATCCGGTGTTGAAGAAGAGCGATCCTCCACAGAAAGAGAAGTCCAGGGAGCCTTCCGAGACCTCCAGTGTTAAAGGAGTCAGGGTAGCCATCAGTAGTCAAAGTCAATACAGGGTTTCTAAAGAAACGCAGGAAGAGCGCAGAGCAAAGCTGGCTGAATGGTTGGCATCAAAAGGCAAGACTTTGAAAAGGCCGTCAATGGCACTGTTGGGCCCTCGCACTTTAAAACTGATACCTAAAAAGGAGCCAGAACCCCATGCTCCCCATAACACGACCATGGACCTTGAAGACAACCAAGAGCAGGACCTGCCTGTAGACCCTGTTGCTAAAACGGAAGAAGATGTTATGAATCTGTGTTGTACCCTGGAAACAATGGTGCTGCCTTCGAAGTCTGAGAGTGATGCACCAGGAAAAGGTGAGAATATGGAAATGGACTGTAAGAAAGAAGAGGATGTGAAAGTGGAGAGTGGGACTGAGGGGGAAGACTTGTGCAAGAAGATCCCATCCCTCAACTCAGGGCAGCAAAGCCTCAAGAAAGAGAGCGGCTGGGATCTGGATCAGGAGAGTGATGAGGCTAAAACAAGTAAAGATGACTCTCCTTCAATATCTGTTGCAATCAAATACAGTGTGACGACTACACCATATCTGCAGAGTGTAAAGAAGATGATCCAGGGGGACGGGAGTAAAATTGCCATTAAGGACCTGAAGTTCCTGACCCCGGTGCGGCGTTCCTGTCGGATTCAGAGGCAGTCTGCTCGACTGCCCAACATGCTGGCAGACCATGACCCCTGTGTGACCTCACTGGGTGAACTGGTTTGCCTGGATGGAGATGCCAATGCCTACATCTACAGATCCAACCCTGCCCTGCAGGCTGTGAAGAGCCTGCCCCAGCATGCAGAAAGCCCAGGCAGCTTTAAGCTGGCTGATATATGATGATCCACTGAAAGCACCTTATCATAGATGGGAACAGTGTTATGATTCTGGGGAGTTCCAATCTATAGCCCCTTTCCAACACTAGCACACCAACCCAAGTTATGACTCCTTTTCTGATTATGGTTTTTGTTAGTGTGAAAGCACACACTGGTAACAAGGGGTTCACAATAGCAGCCCACTCTGCCAGCACTGACCTGGGTAAAGCGAGACAAGTCACTGCTCACTGTGTACTTCCTGCAGTGACCCTGGGTCTAAACCACTATAGTGTGAAAATGCATACCCGATCAGCTTGACACTGTCATAACTGGGTAGAGGGTGCTAGATTAAAAGGGGGTTAGCTGGGTTTATTGGTTACCCATAAATCATCAGTTTAAGACTTTTGCAGGGGGTTGgtaaattcagttattttattgataattttGAATAAATGGCTATATACCCTTCTGATCTCAAGGACCAGCTTTCCATGCAATTAACAATAACCTGTCTTCCTTATTTGAAAACTAATAAGGCTGAGGTCACATAAGAAATTGATTTATAGGTGACCTATTAAAATGAAGGGGTCTGTGATTCTCCAGGGCTAGGGTTGGGGTACCATGCTTGACTTTGATTAGTACTTGTCATTCCAGGCAACCGTAGTCTTGATTGTATGGGCATCTCAAATTCACTATTGCCTGGAAGACCAATTGGTTAATTAGCAGATTGGTTTAAACTTTCAAGGATCTATGGCCCTCAAGGTTGTCTATCACTGTTTAAAGCAATATGGACACCAATATCTGAAGCAGTGGAAACATTAGACCTAATCAAGCTACAGTTTCACTGGGGGGCAAGGCTGTAGTTTTCAATTCAACTTAATTTCACTTCTGCAAAGATGGCATGTGTAAATaagaaattgtaatttattagaATACATGAGTTAACCAGAGTGTTTAAGTTTGTGATACAAAACATGCAAGTCTAATGGCACAGTAGAAATATGTGTTTTGGGcaaaatgttgcatttgtgGCAATGTATTGAAATGCAGTCTTTGATGTGAGTGAAGATTGTCTAGTGAGTGTAAAATCCACTTGTGTTCAACTATAGGAAAAGCATTTTACCTTTTAAAGTCATAAAATGCATTCCATCTCATCACTACTACTCAAATATGAGTGATTTCAATCCTGCTTATGGTGGTTGttatactgtaaaatgtatgatcTTTCCAAGATCCAGAAGCGAGGATGTGCATGTTTGGATAACTAATTTAgtagtagttttttttatatgtatattaactCAAGCTTTCAGTTAACACTTAGCATTTCAGGAAATCAATCGCCAGTCTTTAATATCAACATCTGTATAATCACTATATttagtatttacattttgctaCAATGAGACTTCATCTTCCTGTTTTTTGAATTGTACTATGGtagtgtatttcattttgatgaTTTGGACTAGTTTTATTCAGATTTCCATTAGGGTGAATAAAGAGCGTAGTCTAAAATTATTCTCAGTGGTAGAAACGAGCACCTAAATCCATGTATGATTTTTgaataccatttttttttcttctcttaaaTGGTGCTCTCTTCATTCATGGAATGTACAAATATTGTGTAACTGTATTGATCAATACTCTACATCTTTAATTATCCTATAAATTTGCAGATGAGGAAAGCTTTGGTTTTAGACTGTTTTTTAGATTAAGAACACTTTAAATAGTTCATATCTCTGCAGCTGCACTATTGCTGTATGCAAACAATCTGCACCACACTAtctggggttggggggtggtagtgggggaaaaaactattaCGACTATTTTCAAAATTACTGTATTCCAGTTTAATTGGGTGGTACTGTTCACAAGCCGTTAATGAAATTGATCTGTTTTAAGGAGGTCGTTAATAATACTATTTGATACAggagaataaatatttatggactgaATGGAAATAGGTACTTGTATGCCTTTTGTACATGTCCTTAGTTTTTTGTGCAGCTGTATATCAAAACAATTTGTAGcataaacaatgtaaacacCTGCCTATcgttgaaatgtaaaaatatatatatatattcagcttGTTCTAAAAAACATATCtcctgtacattttatatatgtatttaattctacACTAATCTCATCACAAactaattgtaaatatatattaaattcctATTTAAA

Function

GO: NA

KEGG:

id description
K16769 CKAP2; cytoskeleton-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13241 lncRNA downstream 16462 3869724 ~ 3912272 (-) True G10673
TU13179 lncRNA downstream 186472 3741593 ~ 3742262 (-) True G10624
TU13140 lncRNA downstream 381643 3490758 ~ 3547091 (-) True G10592
TU13146 lncRNA downstream 406699 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA downstream 406699 3516013 ~ 3522035 (-) False G10596
TU13262 lncRNA upstream 24451 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 30124 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 40218 3987653 ~ 3987955 (-) True G10698
TU13286 lncRNA upstream 219343 4166778 ~ 4170338 (-) True G10715
TU13308 lncRNA upstream 407418 4354853 ~ 4355296 (-) True G10735
AMCG00016049 mRNA downstream 8231 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016050 mRNA downstream 93379 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016045 mRNA downstream 144238 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016047 mRNA downstream 260176 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016046 mRNA downstream 386198 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016053 mRNA upstream 157296 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016058 mRNA upstream 429010 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016059 mRNA upstream 477553 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016063 mRNA upstream 495981 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016064 mRNA upstream 528904 4476339 ~ 4490665 (-) True AMCG00016064
TU13237 other downstream 8310 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 389541 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 893551 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1218049 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 4244111 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6899399 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6899496 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8375726 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8914664 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile