RNA id: AMCG00016049


Basic Information

Item Value
RNA id AMCG00016049
length 1975
RNA type mRNA
GC content 0.52
exon number 17
gene id AMCG00016049
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3886298 ~ 3920503 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGTTCCTCCTTTGATTGACAAGAGTAACCGGAAATGACGCAGGGGGAGAGGGCGGAGGCTTCACTGTTTTCCCGCGGTTTGAGAGGACTCTGAACCAGGCTCCGGGCGATTCACAGTTTTGTCGCAGCTGGGGGGgtttaacatttacaaacaaacaaacacaaaatacagcgCCATCAACGACAGGATACTCGGTCGACATTTCTCATTGTCCTCCCCTCACCAGGACCTGCGCTGCGAGCTTAAACATGCCCCCGAAGAGACGCAGCGCTGCCCAGACTGCACCGCTTCACAAAGTGGCGGAAGATAAACAGACACACGGTAGCAGCCCCGGGAGTCCGGAGAAGATGGGCAAACTGACCCcgaaaagCCATGAAACAAAGAAGCCGGAATTCGTCTTGCTGTGTCAGCAATTGGACGTATTGGACGAAGTGTGCAACCGAGCCTGGGATGTATGGGATGAGTTACAAGCCTCTCTGGACATCATGCTCGACACCAACAAGAAATACTGGGCGGCCTGTTTGTTTATAGCTGTGACTGACTTGGATGCCATGACTTTTACAATCACAGACCTCCAGAAGGCAGTTCATGTCAACATGAAGCAGTTCTTTGACCTTTTGAAGGAAATGGATGTCAACTTGGTCACCATCAGCACTAAAGTAAATGCTGCCGTGTCCAGGCTGGAGAAGAAGTACGAGGTGCAGCTGGCTCTATTTCAGAGGTTTGAAAGttgtgttttttctatttttgtgcaGCTGggtcaccccccccaccctcccacccccacTGCCTTTGACACTTTGACACCTTTTTTTGGAAAAGTGCTGCAGATGGAGGATGACCTGGTGATCTCATTTCAGCTGCTGCTCTGTGTGCTGGAGTACTTTATACAGCGCTCTCCCCCGTCTGTGCTGCAGGAGCCTTTCAAGACTGCTGCTGATGGGCCCCTCCATGCCCCCCCCACCAGGGCATCACGCCGAAGTCACGGCAGGGGTGCCCGCTCCAGCCCCAAACCTGCCCCTCCTGACCAACGGGTTTTGGAGGCCCTTTGCAAGGAGAACGACTGCGAAGTGGAGGAGGTGAAGAATGTATATATAAGCAGCTTCACTGACTTTCTGGAGTCAGTGGGACTATCAGGATCACAGGGGATCCCCAAGacTGACAACCTCTCCAGTCAATATGAAGAAATTTACCTGAAAAGCAAAGATTTCGATGCCAGGTTATTCTTGGATCACGATGAAACACTACAGCCAGTGAAATTAGACCCGTCAGAGTTTGAGAGAACACCCAAAAAGCATCACCTGGAAGAAGAGGTCATCTCAGTCCCCCCTCAGACACCAGTCCGAGCTGCCATGAACTCCATCCAACAACTAATGGTCTTCCTGAACTCGGCCAGTGACCAGCCTGCTGGAAAGCTTGTACACTACTTCAGTAACTGCACTGTGGACCCTTCCGATGACATCACCAGGAGGGTGGAGAGCCTGGGCCGTCTGTTCAGTGAAAGGTTTGCTCAATCAGTGGGCCACCGCTGCATGGAAATTGGATCGCAGAGGTTTGTACTTGGTGTTCGGTTATACTACAGAGTCATGGAGTCCATGCTGAAATCGGAGGAAGAACGGCTCTCTGTGCAAAACTTCAGCATGCTGCTCAACAATGCTGCCTTCCACACCTCACTCCTAGCCTGCGCTCTGGAGGTTGTCATGGCCACCTATGgctGGAGTACCTTTAAAAGTGGCGGCTCCTCAGAGACCGACCTCTCATTCCCATGGATCCTGGACGTCTTTCAGCTGAAGGCCTTTGACTTCTACAAGGTCATTGAAAGCTTCATCAAGGCGGAGCCCAGCCTGACCCGAGAGATGATCAAACACCTGGAGCGCTGTGAACACCTGATCATGGAGAACATTGCGTGGAGAGCGGATGGCTCCAGGGCGCCACAGGAGCTGGCCATATTCAGAATGGCTCAGTCAGTCTAA

Function

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
K06618 RB1; retinoblastoma-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13179 lncRNA downstream 144036 3741593 ~ 3742262 (-) True G10624
TU13140 lncRNA downstream 339207 3490758 ~ 3547091 (-) True G10592
TU13146 lncRNA downstream 364263 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA downstream 364263 3516013 ~ 3522035 (-) False G10596
TU13101 lncRNA downstream 507713 3378378 ~ 3378585 (-) True G10556
TU13262 lncRNA upstream 51383 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 57056 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 67150 3987653 ~ 3987955 (-) True G10698
TU13286 lncRNA upstream 246275 4166778 ~ 4170338 (-) True G10715
TU13308 lncRNA upstream 434350 4354853 ~ 4355296 (-) True G10735
AMCG00016050 mRNA downstream 50943 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016045 mRNA downstream 101802 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016047 mRNA downstream 217740 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016046 mRNA downstream 343762 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016042 mRNA downstream 383447 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016048 mRNA upstream 8231 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016053 mRNA upstream 184228 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016058 mRNA upstream 455942 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016059 mRNA upstream 504485 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016063 mRNA upstream 522913 4443416 ~ 4451855 (-) True AMCG00016063
TU13149 other downstream 347105 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 851115 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1175613 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 4271043 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6926331 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6926428 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8402658 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8941596 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile