RNA id: AMCG00016050


Basic Information

Item Value
RNA id AMCG00016050
length 876
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00016050
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3823251 ~ 3835355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTCGCCGCTGTTTGAGCTGCTGCATCAGTCCCGGGAGCAGGAGGGGGTGGTGGAGCAGGCCGAGCCCCCCAGCACGCTGAACCAGCCCCTGCAGCACAACCACACTGCCGCTGACCTCCAGCCTCAGGTCCCCTCCCTCAAGCACCTCAAATCCACTTCACTCTCCCTCTTCTACAAGAAAGTGTACCGCCTGGCTTACCTGCGTCTAAACCTGCTGTGCTCCCACCTGCTGAGCGACCACCCTGAGCTGGAGCCCATCATCTGGACGCTGTTCCAGCACACGCTGCAGCACGAACCATTGTCACGGCTTACAAGGACCTTCAAGCGCGTGCTGATCCGGGAAAGCCAGTACGACTCCATCATCGTGTTCTACAACAACGTCTTCATGCAGAAGCTGAAGACCAACATCCTGCAGTATGCCTCGCCCAGGccGCCCACTCTTTCCCCCATCCCACACATCCCCTGTAGCCCCTACAAATTCCCCAACTCCCCTCTGCGTGTGCCAGGAAGCAACAATGTGTACATCTCCCCTCTGAAGAGCGCCCGCATGTCGCCCAGTGTGATGACGCCCCGCACCAGAATCCTAGTGTCCATCGGCGAGTCTTTCGGGACCTCTGAGAAATTCCAGAAGATTAACCAGATGGTGAGCAACAGCGAATGGTCTCTGAAGAGGAGCCTGGACAACGACCGCACCCCCAAGCCGCTCAAGAGGCTGCGCTTCGACATGGACGGCCAGGATGAGGCAGACGGAAGCAAGTCCACGGGGGAGTCCAAATTCCAACAGAAGCTGGCTGAGATGACCTCCACCCGGACCCGCATGCAGGAGCAGAAGCTGAAGGACGCAGCCGACTCCCTGAAGAAGGAGCTTTCCTGA

Function

GO:

id name namespace
GO:0021554 optic nerve development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007601 visual perception biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13179 lncRNA downstream 80989 3741593 ~ 3742262 (-) True G10624
TU13140 lncRNA downstream 276160 3490758 ~ 3547091 (-) True G10592
TU13146 lncRNA downstream 301216 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA downstream 301216 3516013 ~ 3522035 (-) False G10596
TU13101 lncRNA downstream 444666 3378378 ~ 3378585 (-) True G10556
TU13241 lncRNA upstream 34369 3869724 ~ 3912272 (-) True G10673
TU13262 lncRNA upstream 136531 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 142204 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 152298 3987653 ~ 3987955 (-) True G10698
TU13286 lncRNA upstream 331423 4166778 ~ 4170338 (-) True G10715
AMCG00016045 mRNA downstream 38755 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016047 mRNA downstream 154693 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016046 mRNA downstream 280715 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016042 mRNA downstream 320400 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016041 mRNA downstream 347258 3463666 ~ 3475993 (-) True AMCG00016041
AMCG00016049 mRNA upstream 50943 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016048 mRNA upstream 93379 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016053 mRNA upstream 269376 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016058 mRNA upstream 541090 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016059 mRNA upstream 589633 4424988 ~ 4427749 (-) True AMCG00016059
TU13149 other downstream 284058 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 788068 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1112566 2710399 ~ 2710685 (-) True G10420
TU13237 other upstream 72404 3907759 ~ 3920424 (-) False AMCG00016049
TU14024 other upstream 4356191 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 7011479 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 7011576 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8487806 12323161 ~ 12329033 (-) True AMCG00016211

Expression Profile