RNA id: AMCG00016058


Basic Information

Item Value
RNA id AMCG00016058
length 1479
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00016058
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4376445 ~ 4378160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATCTTCTCTTCATCCCTGGATTCAACCACCTTctcatctctttctctcctctctgtgtttTCAGAACTCCATCAGACACAACCTTTCCCTGCATAGCCGCTTTGTGCGTGTGCAGAATGAGGGCACCGGGAAGAGCTCATGGTGGATGCTAAACCCAGAGGGGGGTAAGAGCGGCAAGTCCCCCCGGCGCAGGGCCGCGTCTATGGACAACAACAGCAAGTTTGCCAAGAGCCGCGGTCGCGCAGCCAAGAAAAAAATGGCTCATCAGAGTGGGCAGGACGGCAGTGCGGACAGTCCTGGTTCCCAGTACTCCAAGTGGCCCGGCAGCCCCAGCTCCCACAGCAACGATGATTTTGATGCCTGGACGACCTTCCGCCCACGCACCAGTTCCAATGCCAGTACCGTCAGCGGTCGCCTCTCCCCCTTCATGCCTGAGCAGGACGACCTGAGCGAGCCTGATGTGCACCTGGTCTACTCCAGTGCCTCCAGCAAAATGACAGCAACCTTGCCCAGCCTCTCAGAGATGACAGGCTCCATCAGCCACCACAGCTCTGAGAACGTCATGGAGAATCTTCTGGACAACCTCAATCTTCTCTCCCCTAAGAACCCCCAGGTGGTGGCCAGCAGCCCATCCCaatcctctccctcctccatgATGCAGCCCAGCCCAGGTTACCCTTCATACAGCTCCCCCAGTGCCGCCACCTTGGGCTCCCAGTCCCAGCAGGACTACCGCAAGTGCCTGTATGGACAGGGCGGGATGAACTCCCTGTCCCCCATGCCTATGCAAACCCTGCCAGAAAGCAAGCCAGGTTTTGGGTCGTCAATGACCCAGTATGGCTGCCCCACGGGACTCCTCAAAGAGCTCCTCACCTCGGACTCAGACCCTCATGCAGAAATCATGCCCTCGGTGGACACTGTGGTGTCACAATCCAGCGCCAGGGTTCCCAATGTCATGATGCCCGCCAGCTCGGTGATGCCCACCAACTCGGTGTTGTCCTCCTATAGTGGTGGGCAGATCAGCCATGGGAAGTTAATGAGCCCCAGCAGTggccacacgcacacacacccacatgcAGTGCACTGCCAGACCACGGCTTCTATCAATGGTCGTGTGTTGCCCCACCCGATGACCTCAATGAACCACAGTGCGGGCCTCAGCCGCCTCTCCACCGTAAGGACTCCCCAAGTGCCTCTGGGCCACCCCCTGCACATGAACACCCTGCCCCCTTACTGCGCGGTCAACAGCAGTAATGGTTACAGCCGCATGGGCCACCCCACTGCCCACCACGAGAAACTGCCCAGCGACCTGGATGACATGTCCATTGAGCGCTTCGAGTGTGACATGGAGTCTATCCTCCACGACACACTGATGGATGGAGACTCATTGGACTTTAACTTTGACCCCATGGTGACCACGCAGGGCTTTCCCCACAGCGTGAAGACCACCACACACAGCTGGGTGTCAGGGTAA

Function

GO: NA

KEGG:

id description
K07201 FOXO1; forkhead box protein O1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13313 lncRNA downstream 2724 4371465 ~ 4373721 (-) True G10740
TU13308 lncRNA downstream 21149 4354853 ~ 4355296 (-) True G10735
TU13286 lncRNA downstream 206107 4166778 ~ 4170338 (-) True G10715
TU13268 lncRNA downstream 388490 3987653 ~ 3987955 (-) True G10698
TU13266 lncRNA downstream 397328 3977559 ~ 3979117 (-) True G10696
TU13391 lncRNA upstream 208563 4586723 ~ 4587875 (-) True G10805
TU13392 lncRNA upstream 213660 4591820 ~ 4592077 (-) True G10806
TU13398 lncRNA upstream 244571 4622731 ~ 4623216 (-) True G10812
TU13410 lncRNA upstream 260290 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 261629 4639789 ~ 4641030 (-) True G10823
AMCG00016053 mRNA downstream 270714 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016048 mRNA downstream 429010 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016049 mRNA downstream 455942 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016050 mRNA downstream 541090 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016045 mRNA downstream 591949 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016059 mRNA upstream 46828 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016063 mRNA upstream 65256 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016064 mRNA upstream 98179 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016062 mRNA upstream 129303 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016065 mRNA upstream 140410 4518570 ~ 4532263 (-) True AMCG00016065
TU13237 other downstream 456021 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 837252 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1341262 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1665760 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3813386 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6468674 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6468771 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7945001 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8483939 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016633 True 1959 mRNA 0.58 3 NC_007126.7 3284684 ~ 3372979 (+)
grasscarp (Ctenopharyngodon idella) CI01000320_02336309_02366406.mRNA True 3607 mRNA 0.52 8 CI01000320 2335946 ~ 2366815 (+)