RNA id: AMCG00016061


Basic Information

Item Value
RNA id AMCG00016061
length 1524
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00016061
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4495818 ~ 4499954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aattaaaataataataattgtctttCACAATCCACTTCTAAATAAGAATTCGAGGAATGAAGGAGGTGATGCAACCTTCTCTTCTGGCCATAATCTGCAACATCTGGAACATCTGGAGCGGAGggcacatataaataaaaaatgtaatagagaAAGTATGTATTTCGCACTCGTGGAGTACCCGGACATTGCCTTTCACTAAACTGCGTGTCTTTCTGGTAAAATCAAGACAGGGTGTGTGAGGCAGGGACATGTTGTCGCTGATGCTGGTTCTGCTCTTCGTGCGCCAAACTGCAGCTGCGCACCGACTGTCACTGAAGACCCTGAGAgaaaactactactacttccCAGAGAATCGCAcgttcaaacaaaacaagtccAGAGACCTTGCTCAGCAACCCACAATGCTGCCCACCACAGGAGGAAACCTCATTGTATATGACCAGGACTGCTCCATGCTGTATGACAGACAGAAGGCCTCCAGCGGGTTCTATCGGATCAAGCCCAGATCAGCGATGGAGCCCTTCCTGGTGTACTGTGACATGACGGATGGGGGAGGGTGGACCGTGATCCAGCAGAGACGCAACGGGAAAGTGGATTTTAACCGGTACACTGCAACTTATCCTTGTTCTCATTCACTCATTCACCTGCAGCCTGGCTGATTGAAGTGATATATTTCCACTCACGCTGGCCAGGAGAGATCACCCATGCCATTACACTTGCCAGTTAACATCTCAGAGAGCAGAGGTGACAGTCTCTATTTATTGCAATTAGGGTAACATCAgtaaagtctctctctctccctctcccctgcaTCATGTGAAAGATAGTCCTAttgctaaaaaaatatatgtgcagTATATTAACAAAACTGTATTGCTAAGCAAAGAAAGGACTTGATACACTTGCAAGCCCTTTGACAATAAGTCCTTGAGAGATGCATATTTACTGAgattacaatgtaattatgcTGCCAAATTAATGTTGACAGGCTACTGATTCTAAACTTTGAATGAACAAGCTGATGGTAGAATGTGGTAGTGACTTATTAAAGCTTATCTTTTCTCTAGAAAATGGAGTGATTATAAAGACGGATTTGGGAATTATAAAAGAAGCAATGATGAGTACTGGCTGGGAAACGAAAACATCTACATGCTTCTCCTGGGTGGtaaaaatcagtttatttcTCTTGCCagaatattaacatattaaaagtGACTTACTCTGTAAAACTAGTAATAGATTTGATTCTGAAACTATATAGCAAATTGGCAATCTAACACTGTCCTTTTCCCTTTGTGatatttgactgttttgtttacaaacaaaaggaggctattcaacccatcgtgctcgtttggtgtccaaggatcctatccagtctatttttgaatgttcccaaattctcagtttcaaccacatcacttgggagtttgttcagattgtgacgactctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13310 lncRNA upstream 118155 4376307 ~ 4377663 (+) True G10737
TU13309 lncRNA upstream 122097 4371487 ~ 4373721 (+) True G10736
TU13305 lncRNA upstream 159514 4336041 ~ 4336304 (+) True G10732
TU13277 lncRNA upstream 286173 4209381 ~ 4209645 (+) True G10707
TU13265 lncRNA upstream 516721 3977559 ~ 3979097 (+) True G10695
TU13384 lncRNA downstream 85280 4585234 ~ 4585486 (+) True G10798
TU13379 lncRNA downstream 86594 4586548 ~ 4587637 (+) True G10794
TU13444 lncRNA downstream 407852 4907806 ~ 4912418 (+) True G10853
TU13555 lncRNA downstream 1341274 5841228 ~ 5841821 (+) True G10939
TU13652 lncRNA downstream 2235656 6735610 ~ 6744358 (+) True G11021
AMCG00016060 mRNA upstream 18480 4470062 ~ 4477338 (+) True AMCG00016060
AMCG00016055 mRNA upstream 290504 4201763 ~ 4205314 (+) True AMCG00016055
AMCG00016056 mRNA upstream 306862 4160355 ~ 4188956 (+) True AMCG00016056
AMCG00016057 mRNA upstream 366940 4126490 ~ 4128878 (+) True AMCG00016057
AMCG00016051 mRNA upstream 529632 3949181 ~ 3966186 (+) True AMCG00016051
AMCG00016067 mRNA downstream 32370 4532324 ~ 4553950 (+) True AMCG00016067
AMCG00016066 mRNA downstream 70237 4570191 ~ 4576419 (+) True AMCG00016066
AMCG00016076 mRNA downstream 548254 5048208 ~ 5108992 (+) True AMCG00016076
AMCG00016077 mRNA downstream 1872445 6372399 ~ 6487517 (+) True AMCG00016077
AMCG00016079 mRNA downstream 2141704 6641658 ~ 6658898 (+) False AMCG00016079
TU13312 other upstream 67759 4427146 ~ 4428059 (+) True G10739
TU12970 other upstream 1725148 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 1734099 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 1734099 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 2008067 2485542 ~ 2487751 (+) True G10371
TU13602 other downstream 2154758 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 2164132 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 4568327 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 4599466 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 4723458 9223412 ~ 9226245 (+) True G11545

Expression Profile