RNA id: AMCG00016065


Basic Information

Item Value
RNA id AMCG00016065
length 2738
RNA type mRNA
GC content 0.42
exon number 14
gene id AMCG00016065
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4518570 ~ 4532263 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTATGTCacgtgattaaaaaaaacacaacagacattttatttcaaacattgaattatttaactacttatttaaaatattattggccggatttgttatattgtttttttttttgtacagccAAGTGTACAGGCAGAAAATTAGGCACCATACaggaagtaaacaaaaataGTCAGTGATGACATTCGAGAGTCCAGTGTGGAGTGTGGTTTGATGTCCATGTCCATTGAAGGCGATAGTAGACAACAATGGACCGATTCGTGTGGTCAAACGGTCTGCTGGAAATGAATGAAACGATGGTGATTCAGCAAAGAGGTGTCAGGCTATATGACGGAGACGAGAAGGCTAAGCTTGATGTGGGGACTGTTCTTCTGAGCACACACCGCCTCATCTGGAGAGACCAaaagaataatGAGTGCTGCATTGCCATTCCGCTGtcacagattgttttctttgagGAGCAAGCAGCAGGGGTTGGCAAGAGTGCTAAGATTGTGATTCACTTGCACCCTGCCTTATCCAATAAAGAGCCTGGGCCATACCAGCAGAGCAAATACTCCTACATAAAATTGTCCTTCAAGGAGCATGGGCAAATTGAGTTTTACAGGCGGCTGTTGGAGGAAATGACACAGAAACGATGGGAGCAGATGCCAGTGTCCCAGCCCATTCACACTGGTACTGCAGGGCTGGCAGGAAGGACCAGGGCAGTTGGAATTGTGGGTATTGAGAGGAAGCTGGAGGAAAAGCGAAAAGAGAtggacaaaaacatttcagagGCTTTTGAAGATCTGAGCAAGCTTATGGAAAAGGCAAAAGAGATGGTGGAATTATCTAGGTCTATAGCCAACAAAATTAAGGACAAACAAGGAGACATCACAGAAGATGAGACTATCCGCTTTAAATCTTATCTTTTGAGCATGGGCATAGCGAACCCAGTCACACGAGAGACGCATGGCTCTGGGACGCATTACCACATGCAGCTAGCCAAGCAACTGGGGGACATGCTTTTGGCCCCACTAAAGGAAAGAGGAGGTATGATGGCTTTGACTGAAGTGTATTGCCTGGTCAATCGGGCTCGGGGGATGGAGTTGCTCTCCCCAGAGGATCTGGTGAATGCCTGTAAAATATTTGAGTCCCTGAAGCTGCCCTTAAGGTTGCGCATTTTTGACAGCGGGGTTATGGTCGTTCAGTTGCAGTCCCACAGCGAAGAAGAAATGATCGCTTCTGCACTCGATAATGTGTCTGACAAAGGCTCTCTAACATCCGAGGAGTTTGCAAAGCTCCTAGGACTCTCAGTCCTTCTGGCAAAAGAGAGGCTGCTTCTTGCTGAGAAAATGGGTCACCTCTGCAGAGATGATTCCGTGGAGGGCTTGCGGTTTTATCCCAACCTCTTTTGATTTGGAGTGGCCAATTTACTGAGGTTTCATGCCATTGTTGTATCTCCAAGCCTCCACTCCAAAGGATTGTGAGGTCCTCTTGGAGTTCACAGTCTGACGAAGACCTGGTTTGAAGGCAGTGTGATTCTTCATTGGTGGTGTGGACTACACCTGTACCAAAACTCTGTACAACGTTTGGCGCTTCAAATTGCTGTATGGTGCAGAAGTCACAAAGCTGAATACTAGTTATGAATTTATACTTATGGGACAGTTATTACTGTGATACTAACCTGTGCTATAATATGTCAGGAATGGGATTGTAGTTTTCAGTTTATCCCTCTTAGGCAGGGGGGCAGGGGCTATATAAAGCTGTTACATGTCAGAAGAATGATAGCTTGAAATTATTATCTTGCTTAGTTGGACAACTTGTGGGTTACatttctgctgttattatgcctcATGCTAGGGGTACTTACAATGTCCCTAATGGTCGCAACTGAATGGTTAAAATTAGATTGTTAATTCTAGCACTTGGATCTTTCAGAGGTCCTGCCTAAAATAAGAAGGCAGTTTTCTTCCTACTTGGCATTAAAGAGCACTCCTTCCCTTGGCATATGGGGCTTGTTTCCTTATTGTCAACTACTTGTTCTCATGAGTCCTGTAAAGATATCTTGTAAAGCTCTTCTTCCAGACTGTACAGACATCTGTATAGATGTCTTCTGTGACGTTGGCCGTCATTCCTCTGTGAAATCCAGGTAGCTttctatatataatacatatgcaTAGTTTTTACAAACTTAATTACAATCTTGTCAACATATCTTGTctcgactgaagtggaagtttATTTTTGGAGCTGTGACAGAGCCTTTATCATTATATTAGTCTCCACTAATAAACCTAAAAGTTGTGACTGAATCCTATTAAAGTTTTTGCTCTACCCATTTGTCAGGGTGTAAGAGACTGTTTTAACTCTGCTAGGTTTATTGTAaatcatacaataaataatCGATACCTAGTTGTTTCCCAATGAGCAGGGCATTATCCTAAATCCCGTGTTCCTTCTGTAGCAGAATTAATAAGGGTTAGAAGGTGCACTAGGATCACTGTCTTGAAGCCATTgatatattttccattcatgAATAACCTTAATTTCTTAAGAGGGCAGAATCAATTGAGACAGTTTAGAGAAGAGTATTTGTATGTTCTGGCATTTTTGTGAATGTTTATGTAGACCTGGAAGCCTTTCAGGTGACATAATTGAAAAGTGTTGTCCCTAACTaaaagaataaaggaaaaaaaaaacagtctgaTGATAAATCCTGTTTTCTGTTATAAAAATGGTTCTGTGTATATTAAAAC

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0043130 ubiquitin binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K12190 VPS36, EAP45; ESCRT-II complex subunit VPS36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13313 lncRNA downstream 144849 4371465 ~ 4373721 (-) True G10740
TU13308 lncRNA downstream 163274 4354853 ~ 4355296 (-) True G10735
TU13286 lncRNA downstream 348232 4166778 ~ 4170338 (-) True G10715
TU13268 lncRNA downstream 530615 3987653 ~ 3987955 (-) True G10698
TU13266 lncRNA downstream 539453 3977559 ~ 3979117 (-) True G10696
TU13391 lncRNA upstream 54460 4586723 ~ 4587875 (-) True G10805
TU13392 lncRNA upstream 59557 4591820 ~ 4592077 (-) True G10806
TU13398 lncRNA upstream 90468 4622731 ~ 4623216 (-) True G10812
TU13410 lncRNA upstream 106187 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 107526 4639789 ~ 4641030 (-) True G10823
AMCG00016062 mRNA downstream 1084 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016064 mRNA downstream 27905 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016063 mRNA downstream 66715 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016059 mRNA downstream 90821 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016058 mRNA downstream 140410 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016073 mRNA upstream 44281 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016072 mRNA upstream 68678 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016071 mRNA upstream 94321 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016068 mRNA upstream 111077 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016070 mRNA upstream 213006 4745269 ~ 4763349 (-) True AMCG00016070
TU13237 other downstream 598146 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 979377 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1483387 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1807885 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3659283 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6314571 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6314668 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7790898 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8329836 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile