RNA id: AMCG00016066


Basic Information

Item Value
RNA id AMCG00016066
length 1897
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00016066
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4570191 ~ 4576419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACCACTACGTCACTTATCTGTTTTCCtgtcaaatatttacatgctACGATGACTGAAAACAGGTCCTGCCCACTGCTGAAATTGCCCTAGGCTAACCATTAAAAGCTCACCACTCCCTCATTCCTAACAGAAGTAACTCAAAAAAACATATGGAAATGGAAACACAAAGCAGTGTTGAAATGCACAGCAAACAGGATTTAATAGAAGATCATCATGGTGGTCTGGGCTGCTGCGGCTGGGTCTTGGTTATCCTCTCCGGTCTCTTTGTGGTTTTGACTTTCCCCATCTCCCTCTTCTTGTGTATAAAGATTGTACAGGAGTATGAACGGGCTGTCATATTCCGACTGGGGCGCATCACCTCCAGAAAGGCGAAGGGGCCGGGTCTGTTCTTCATCTTGCCCTGCACCGACTCCTTTGTGAAAGTTGATATGAGAACAGTTTCCTTTGATATCCCTCCACAAGAGATCCTGACAAAAGACTCAGTGACTGTGGCTGTGGATGGAGTGGTCTACTTCAGAGTCCAGTCGGCCATCTCCTCAGTCGCCAATGTGAGCAATGCTGACTCCTCCACCCGCCTGCTGGCTCAGACCACTCTGAGGAACGTCCTGGGCACAAAGAACCTGTCTGAGCTGCTCTCTGACCGTGAGGAGATCTCCCACAGCATGCAGGTGACACTTGATGCCGCCACAGATAGCTGGGGTATTAAGGTGGAGCGTGTCGAGATCAAGGATGTCAAACTGCCTGTTCAGCTGCAGAGGGCTATGGCAGCTGAGGCAGAAGCTACCAGAGAGGCCAGAGCCAAGGTTATAGCAGCAGAGGGGGAGATGAATGCCTCACGGGCCCTGAAAGAAGCCTCCCTGGTGATCGCTGAGTCTCCCTCCGGCCTGCAGCTGCGCTACCTGCAGACCCTCACCACCATTGCCAGTGAGAAGAACTCTACCATCGTCTTCCCCCTGCCTATTGATGTGCTGCAGACCTACCTGAAGGGGAAATGACTCCCCAGCCTTGCTCCTTAACGTCATAGCAAGATGAACAAagttttgtgctttttcatttcaaacagaCATCTGGTCAGCCTCACTTTGGAACAAACTTATCCTTATACTtgatatgaaatatatttctattcCACTACTTACATTGGTTTTCGGATATCACAATACACACAGATATGACAgagtttaaaaacattgaatacCAGATCCATGTTTACCAACTTATCTGCCAGAGGTGAAGAGTACACTTGGGCCTGGATTGGATCAAATATTCCATCCCCTCTTGCTTCtaacaaaaatctaattttgattGGCTGTTGGGTGGAAGCTTTCATTGAATACATGAGCCTCATTGTCAacagcatttaaatatgtgtatgcACTTGTGAAAATTAGACCACAGTCATTGCactgaaattatttaatgtattgaaaaatatgaCAATGCAGTGCTGGGGAACTCCCACAATTGGTCAGCGTTGGGTTAGAATCCAAAGGCCCCAGAATGCTGTTTGCCAGAAAAAGTTAAGCAGTCATATAAGAATGGAGttctataaattattttaattatttttactgtgAATTGTAATATATACTGACAatgaatattgaaataaatgtaaatacatgctGTGTATGCTACTTGATATACCTgacttgcatttttaatttgaagcacATAACATCATATGAAATGACAATTTATGTTCACTCTCCAAATGTCTAATGGAAGCCAGCATATCTTCACAGAAGTACAGTTCCCATTTATAGACTGTCACATCAGCCTTAAAACTTACTGTATTATGTCAACTGTGCACTTTCCAGAACTGAACCATTAACATGTATACGTTTGtcctatgtttattttttgattatgatgaataaacatttacacaaaat

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13310 lncRNA upstream 192528 4376307 ~ 4377663 (+) True G10737
TU13309 lncRNA upstream 196470 4371487 ~ 4373721 (+) True G10736
TU13305 lncRNA upstream 233887 4336041 ~ 4336304 (+) True G10732
TU13277 lncRNA upstream 360546 4209381 ~ 4209645 (+) True G10707
TU13265 lncRNA upstream 591094 3977559 ~ 3979097 (+) True G10695
TU13384 lncRNA downstream 8815 4585234 ~ 4585486 (+) True G10798
TU13379 lncRNA downstream 10129 4586548 ~ 4587637 (+) True G10794
TU13444 lncRNA downstream 331387 4907806 ~ 4912418 (+) True G10853
TU13555 lncRNA downstream 1264809 5841228 ~ 5841821 (+) True G10939
TU13652 lncRNA downstream 2159191 6735610 ~ 6744358 (+) True G11021
AMCG00016067 mRNA upstream 16241 4532324 ~ 4553950 (+) True AMCG00016067
AMCG00016061 mRNA upstream 70237 4495818 ~ 4499954 (+) True AMCG00016061
AMCG00016060 mRNA upstream 92853 4470062 ~ 4477338 (+) True AMCG00016060
AMCG00016055 mRNA upstream 364877 4201763 ~ 4205314 (+) True AMCG00016055
AMCG00016056 mRNA upstream 381235 4160355 ~ 4188956 (+) True AMCG00016056
AMCG00016076 mRNA downstream 471789 5048208 ~ 5108992 (+) True AMCG00016076
AMCG00016077 mRNA downstream 1795980 6372399 ~ 6487517 (+) True AMCG00016077
AMCG00016079 mRNA downstream 2065239 6641658 ~ 6658898 (+) False AMCG00016079
AMCG00016080 mRNA downstream 2093887 6670306 ~ 6679037 (+) True AMCG00016080
AMCG00016078 mRNA downstream 2114334 6690753 ~ 6700886 (+) True AMCG00016078
TU13312 other upstream 142132 4427146 ~ 4428059 (+) True G10739
TU12970 other upstream 1799521 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 1808472 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 1808472 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 2082440 2485542 ~ 2487751 (+) True G10371
TU13602 other downstream 2078293 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 2087667 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 4491862 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 4523001 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 4646993 9223412 ~ 9226245 (+) True G11545

Expression Profile