RNA id: AMCG00016068


Basic Information

Item Value
RNA id AMCG00016068
length 5700
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00016068
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4643340 ~ 4664628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCAGTGCTGCTGCAAGCCCTATGACTGTCACCAGTGTCTGGACAAGACgAGTGAAAGTGCCCTCGTGAAAGAGAGGGAGCTCTCCCTGGAGCTTGCAAACCTCAGGGATGAAGTGGCCTTCAACACAGCACGCTGGGAGCGTCTGCAGAGGGACaaggaggagctggagaggcGCTTCGAGCGGGAGCTGAGGAGGCTGCACGTGCAGCAGGAGGCCGAGCTGACTGCGCTGGAGGACGGACTGAGGGCGCACCACAGGGCTGAGCGGGACAGGCTGCAGGCCCAGCACCAAGCCCTGCTGGAGAACCTCTGCAGCCAGCAGCAAGAGCAGattgaagaaataaatgtgaGCCACGAAGCGACTGTGCTGGAGATGGAGAACAGTCACACTGAAACTATAGCTGAGCTTCAAGACGAGCATGAGAAGAGAGTGAAAGAGTTGAAGATGGCCCACGAACTGGAAAGAAAATCACTGGAGGAAGATTTTGAAAAGCTGAGGCTATCACTGCAGGACCAGGTGGACACTCTGACATTCCAAAACCGCAGCCTGAGGGACCGAGCCAAGCGCTTTGAGGAGGCCCTGCGGAGAAGCACAGACGAGCAGATCGAGGTATCCCTGCCCGCCACTCCCTCACACATACTCATGGACGCACTGGCCCCCTATCAGCACATCGAGGAGGATCTGAAAAGCCTTAAGCATGTTCTGGAGATGAAGAACCTGCAAATCCACGAGCAAGAAAACAAGATCTTGGAGCTGGAAAAACTAGCAGAGAAAAACGTGGTTCTAGAAGAAAGGGTTCAAGTCCTCCAGCAACAAAATGAGGATCTCAAAGCCAGAATAGATCGTAACCTTGCAATGTCGAGGCAACTTTCGGAGGAGAATGCCAACCTGCAGGAGCATGTGGAGAAGGAGAGCAATGAGAAGAAACGTCTCAGCCGCACCAATGAGGAACTGCTGTGGCGGCTCCAGACCGGGGAGCTGCTGAGTCCCAGGATGTCGCCCTCCTCCTCACCCGTCCACCGCTCCTCCCCTGGGCCTGCCTCTCCCTCCAGACTCAACCCCTTCCCCAGATGAGGCCGTCCCTGACGAACCCTGGAGATCCATTCATCACAAACAAGTCTCTGCCCTGGGGGTGACGACAATACAACGCGCATTTTCCCctgaacagattttattttcttccaggtACACACAGGGAGTCCTCCCAACCTCGATATTTACAAACCACCTTGTAACAATTATTCCTGTATGCAAGGACTCAGACCCCTGCAGCATACAACTCCCTCAAAGTCTCACCAGAgcgcaaaaaaataaactttctctTCCACAACCAAAACCGTGGAAACccccttttttccctttttgacTTTGTCTATAAAATCACAGGTATGTCACATGAGGCAGTTTTGGAATAAACACTTTCTACTTTGCTCCCCACGCTCCCCCCTTCTTGACTGAAGGAAACAGAACAAGccaacaaaacaacaagtaGAAAAAGCTTCAATACTTCTCAAGAACAAGCTAAGCAAACATCCAGGATTAGATTTCTAGCACATTGTGCCTCTTATCTCAAGGTGGCCTCTTTTTCTCATCTGCTGTACCGTCAGCTTCGGCCAGGATAACGCACCAAGATTCCAAGAAGCGCCTTGCAGTCTGCCTCTTTGGCACTTATCGAAATTCATACACCAGCAGTTTACCTTGTCTGAACCTCCATCTGCCTTCTCTATCTgcggtttccttttttttttcataactaaataaatacatttaaaaaaaaacgcaaCACAGAATCGGGCGCTAACATTTGTAGTGCTGATTTTGTGTATCTCATACTCCGCAGTTCGCAGGACAAAGCTGCCCATTAAGCAGATGATTTCCTCACGTCCTataatttttatgtttatttttacatttgtatttattcaatttatttctaTAAAAGCATGTACTGTAAGTCTTCCAGTTCTAACTGCAGACTAGTGTAATACTCTTGTACAGATGGAGAAAAAGGAACCTACCACCAACCCCTTTTTGCAGCAGTTGGTGGAGTTCAGTCTCTTCTTCCTTCCTCTTGtatccagttttttttttcctaattgaAAGAAAAGGTAGATGAAAGTGCGATCAATGTAGGTTTACGTAATTATTTGTTCAAGTCCAGGTCAACCTTTTATTACCTCTCATGCATAAGTAGCAtttagggaaaacaaaaatgtaaatctggAATGGTTTAGAAAAAGAATTGTGTGTATGAGCTATTTATATAAAGCCAGTTTTAAAGTGTCTTTGTATGTTCAGGGTTTGTGCAGTGTTAGCTCACTCCACTACTATGTAAGACATTGATCAACGTATTCACAAATATGTCTAGCTTTGCCCTTGAGACCTAGGGAAGGTCTCAAGGGGAAATccagcacacacaaaatattgtcTGAGATACTTTCTTAAACACATAGGTAGAGACTGAGtcattttacagtttaacaTGACCTTAAGACCTTTGATATTAACTGTATAGCACTATACAGAATATTTTTCCAGATGCAGAAAGGGCCCAGACTCCCTGTTCTGGAAAGATCACCCCTGTTTACAAAGAGGGAGATGTCAGCACATCATCCATGTTCTTTGtcgtttgtttttattaaaatatgttgctATCCAGGATAAAACCTCTTGAGATGTAACAAGGGGTTATTGGGTAAGCGGCAGacaacacataaaaacatcCAGAATAATCAAACATCTcatacacaaacagaataatttaCAATCACAATCTTCCTGTAAAAAAGTAACCAAAGCTCATTGTAAAAGGAGTAAAACGTCCACTCAATTTCTAATGATCTGGCAAGCCACTGCAATCATGtagtgctgaaaaaaaaaaaaaaaagccttttaaaCAAGTTCTTTATGTACCCTTGGAACTTTAAGACAGTATCAGACAATCTCAGTGAATaactccatttaaaaatatcttcagATAGTCTAGAGCTTTCAAACATATACGTAACAAACTATTCATACCAGTGCTGTTTGTCTTTCACCTCAGGTGAATATCAGGTTTTTGCCCATAGCTCATCTATGTCAAAATTTGAACAGGCCTAGCAAGGTTAAAGTATAAACCCTTTGTGTTAAATCTTTGTGCCTAATCTACTTATATAAAAAGGCCAggtaatatttttaaacctctATATTAATCTTCCTCTCCCTCCAAATGTATTCCTGAACAGAAGCCTAAATTGGACAATCTCAAGCTAGGTTTTGTCAGCTTTGTCAGATCACAAATAATGTCTGAAATTGAGATGGTTGCTTTACACTTTGCAATTACACAGATATGCTGTTTGATTCAGGTTTAGCTTTGCTCTGAATGGAAATCCAATACAGCACTTATAAGTGTGTTTGATTTACAGACTGCtagtattgtactgtattaataCACTGCTCAAAGGAAAGGTTATGTATAACATAACTTCAGTCTCATATTGTTTCCACATTCCATCCAAGCATGCATTTAAGCAGCAAACTCCCCACTCCATTTGTCCATGAGCATCCCTCCACTACTCCAAATGCAACATTTATTAGCAGCAGCCTCTTGCCTTATAAACCTAGTGTGGGAGTTCCAATGACTTCGTCTGCATGGCTAAATCATTGTTCCTTTAGTGTAATAAATTAGGCCAAATgccaaaacatgtattaaaatatatccatTCACTTTCCTGCCCCTAGGGGTTGTTTGAGATTCTATGTAAGCTGGATCTATTGGTAAGCCAGTCCTGACAAATTGGTGAAAGCAATCATTGTGTGGTTTGGTGAGATAGAATAAAAGTATTTCCTGGGACCTATGAAAGGcatataataatactgtatgAAAAGATGGTAGATGACAGTATATATGTAACACTActgatattataaaatcaaGGTAATATTTCCTTGAGGTAATATTTATCTTGTGAAACTAATGCTAATACTATGTTCTACACTACTATTTTACGCAGTTTgctcattgttattattacaaatctttaaaaaatgacttcTGAAATGACCATTTCACCGATTATATGTGAACTGCTGTAAGTGGAAAGAGTGCAATTCTTGCAGATACAATTTTGACAGTAATGGTCATTGCCACAGCCTTATGGACAAAGAGGAAATCAGATTTTCTGGGCAGAGAAGTAAAGAAAGTAATTACCACACTGTCGCAATGGCTGTTTCTTTTATAATAGTGGTGTGCTGAACTGATAGTTAAAATTTGCATAGAaatcaaacatttacataacCTCTACATAATCTCTTTCATCtgatacctttttttttaagtctgggTACCAtctcaaaaatgtatatttgaataGTCCTGCATCTAGCCTGCTGAATATATCTGCATCTCCCACTGAGTTCATTCAGGATGGGACCCCATTATCATCCTACTAGAGCAGGGGTCTGTGCCCTTTGCATGTTTTAAAGGTCATGCTTGAAACGTTGATTCATAAAGACTTGGAaatatttcattctgatcaattaaataaatcgTTTTGGTTATGTCAATGTCAGTTATTTACAgataatctgaaacaaacttgtttaattgattgttaaCTAAGAAGTATtaagaaattggtgatttagttttttataaaaCTAACTTTATTGTGGTGCTATGGCACCAGGATTGAAGGCCTGTATCAGGGCCTTCTCTCTGCTTATGAGGGAGAAGTGCTACTCACTggtataacaaatatatataacagagAGCATCTACTGATTGTTCTTATAGTGCAGTATCTTGCTGGGCCCACTCACCTGTAGTGTGATGCGATATGGCAGGATGGTTTGGCTGAAGAGAATCTTTGTAACAAGTAACAAGTATCCTCCCTGTTCACTGCACAATGTAACAATTATAAGACCGCTGAAAGAAAAGCCCAAAGTATAAACCCGCCAGCTACCCTTTGTTCAATCTAGGTTGCAGTAGTTTAGAATCTAATATCATGCAACTATTCATTCCTGAAAGAACAACTGTCATTTCTAAGCCTCATTACAACTTTGCAGTGGTTCTATGTGGCTCACTAAAGCTGCCaaaaatatattccttttcACTCCAACACTATGGTTTTTGGACAGCTCTATCTTGGCAGCAACTTTCTTTGACTTGTTTCACCACTTGAGACAAAATCTCATTACTGATGTACTGAAGCAAACCAATAAATATTGCAGCACCTAAAAAGTGCTTGGCATATACCCACAATGCCAACTTACTGTCAGATATTTGGTTCCCACGATTTTGAGCCAACTTTTTGTAACTGTACTGTCCCTGTAGCTATACTGTTCAACCTAACTTACTGCACAGCACATTTCCacatacagaataaaaaatgtggGAACCAACACACAGTGGATTTTGCAGCACCAAAACAATGGAGAGAaggataaaatgtaataaactacAATACAGGTTTAAGAAATATCCAGAGTagaagtttgtttttatgtatgtgtgtatgtcgGTAACCTCAGATCAAGTATTGAAGCCACAGATGAGAAGCAGACTTCAGGTTCTTAAATCTGTCAGTCACTGTGTGAATTCAAAGACAGAGACAATGCATACTATATCCTCTTAAAAAACTAGAAAATGAAGGATCCCTTATTCTTAagtatagtgagggaaaaaagtttgtacgtttgcccactgacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13412 lncRNA downstream 2310 4639789 ~ 4641030 (-) True G10823
TU13410 lncRNA downstream 4681 4638450 ~ 4638659 (-) True G10821
TU13398 lncRNA downstream 20124 4622731 ~ 4623216 (-) True G10812
TU13392 lncRNA downstream 51263 4591820 ~ 4592077 (-) True G10806
TU13391 lncRNA downstream 55465 4586723 ~ 4587875 (-) True G10805
TU13464 lncRNA upstream 132199 4796827 ~ 4860892 (-) True G10867
TU13465 lncRNA upstream 194430 4859058 ~ 4875011 (-) False G10867
TU13478 lncRNA upstream 239228 4903856 ~ 4907602 (-) True AMCG00016074
TU13491 lncRNA upstream 293451 4958079 ~ 4958278 (-) True G10883
TU13538 lncRNA upstream 328568 4993196 ~ 5065889 (-) True G10924
AMCG00016071 mRNA downstream 7713 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016072 mRNA downstream 40067 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016073 mRNA downstream 61044 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016065 mRNA downstream 111077 4518570 ~ 4532263 (-) True AMCG00016065
AMCG00016062 mRNA downstream 125854 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016070 mRNA upstream 80641 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016069 mRNA upstream 196857 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016074 mRNA upstream 240070 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016075 mRNA upstream 268196 4932824 ~ 5269754 (-) True AMCG00016075
AMCG00016086 mRNA upstream 1950077 6614705 ~ 6636697 (-) True AMCG00016086
TU13237 other downstream 722916 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1104147 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1608157 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1932655 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3526918 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6182206 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6182303 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7658533 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8197471 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile