RNA id: AMCG00016069


Basic Information

Item Value
RNA id AMCG00016069
length 6475
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00016069
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4861485 ~ 4887805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTCTCTCTTGACGGTGAAGACCATGGCCTGTGAGAAGCTTCTGGGTTTTGGGAAGCAGCTGCTGAGGGTGAAGGTGGTGGACTGCAACTTGGAGGACTCGCGCCTGTCACGCTGCCTCAACACCTTTGACCTGATCGCTCTTGGGGTGGGCAGCACCTTGGGGGCCGGGGTGTACGTGCTGGCTGGAGCTGTGGCCAGAGAGAATGCTGGGCCCGCCATCGTCCTCTCCTTCCTGATTGCCGCCCTGGCCTCCGTTCTAGCAGGCTTGTGCTATGCCGAGTTCGGGGCCCGTGTGCCCAAAACGGGATCTGCCTACCTCTACAGCTATGTGACTGTGGGTGAGCTCTGGGCTTTCATCACTGGCTGGAATCTCATCCTGTCCTACGTGATAGgaacatcaagtgTAGCTCGAGCTTGGAGTGCTACGTTCGATGAGCTCATTGGCAAACACATCGAGCACTTCTGCAAAGCACACATGTCCATGAACGCCCCCGGGATACTGGCCGAATACCCAGACATGTTTGCAGTGTTGATCATCTTAATTTTATCAGGGCTGCTGGCATTTGGAGTGAAGGAGTCGGCCATGGTCAATAAGGTGTTCACCTGCATCAACATCCTGGTACTGCTGTTTGTGGTGGTGTCGGGGCTGGTGAAGGGCACGCTAAAGAACTGGCGGCTCACCCAGGAGGAAATGATGAACATCACCAACACCTCCACCTATAATGTTTCAGTGGAGGAGGCAGCAGAATGGAAGTATGGTGAGGGAGGGTTCATGCCCTTTGGCTTCACCGGCGTCCTCTCTGGAGCTGCCACTTGTTTCTACGCCTTTGTGGGTTTTGACTGCATCGCCACCACAGGAGAGGAAGTGAAGAACCCCCAGAGAGCTATTCCCATTGGGATTGTGGCATCCTTGCTGATCTGCTTTGTGGCCTACTTTGGAGTCTCTGCTGCTCTCACCCTGATGATGCCCTATTACATGTTGGATAAAAACAGCCCCTTGCCTGTCGCTTTCAAATACGTGGGCTGGGAAGGCGCCACCTACGCTGTGGCCGTGGGCTCTCTGTGTGCTCTCTCAACGAGTCTTCTGGGTTCCATGTTTCCCCTGCCTCGGATTATTTTTGCAATGGCCAGAGACGGGCTGCTCTTCTCGTTTCTGGCCCGAGTGAGTGAGAGGAAAACCCCCATCGTGTCTACCTTGATGGCTGGGGTCATGTCTGCTGTCATGGCTTTCCTCTTTGACCTGAAGGACTTAGTGGACCTCATGTCCATTGGCACTCTTCTGGCCTACACGCTGGTTGCGGCCTGTGTTCTTGTCCTCAGGTATCAACCTGAACAGCCGAGTCTGGCCTACGAGAGGGCCAACACTTTGGATGAGAGTGAACTGACAGAGTCGGTTAGCAACAGTGATTCTCAGACAGGCATACTGCCTTTTGGGGAAGACAAATTCAGCAtaaagggtttgtttttccCAGAGAACTCCAATCCCACCCACCTCTCTGGCTTTGCAGTTAACATCTGTGCCAGCAGCCTTGGGCTCCTGGTCTTTGTCTTTTGCGTCGTGGCTGTGCAGGGTGGGATGGAGACGTGGTCTGTGGTGCTGCTCATTTTCCTGGCTGTCCTGAGTGCTTTCATCACTTTCATCATCTGGAGACAGCCGGAAAGCAAGACCAAACTCTCCTTTAAGGTTCCCTTGCTGCCAATTATTCCCGTCGTCAGTATGTTTGTCAATGTGTATCTCATGATGCAGCTGGACAGAGGAACTTGGATACGCTTTGCTTTGTGGATGCTGATAGGATTCATCATCTACTTTGGGTATGGAATCAGACACAGTACAGAGGGAGCGTTGAGGCATGCAGGTACAGAGACTACTCTGAACGGATACAAACAGACTTCCTCATTAAATGGTGACCCCATGGCTCCAGAGAAAGAGGCCTTTCTGACCGACCCCAATGAGCTAGAACCCAGGAACCAGTGGAACGAAGAAGAGGGAGAATCTTAAACCGCTAGGGAGTGCTCCAGCTCCAACCAGCCTGACCCCTGCTTTAACTAAACACGATGTTGAAGAGACAAGAGAACCAGAATCTAAAAGCAAAAAGGGAATCCAGGCTGCAGAGCTTGCTTGAGCTGTGTGAGATCCAtctcaaaaagaaaagaatggtGGCTAATGCATTGACTTCTTGACTGCTTCAGCGCACTGTGAGCTCTTGTCCGCTAAAAAGTGTAGCTGCGATGACAAGAATCTCAAATGAAGACTTTCAGGAGGTGCTGTGAGAACTAAATACCAAAAACTAAATAGCCAATCATTGTGTAAGAACATTTAAGTTATGCTCCTGGTTATTAGATACAAACTGTTACAGGCTGCTCAGCTTTACTGTATAAGATCACTTGTTCTTGTACTTGCCTTTGCTCAGAAATAGTCagcaaagttttgttttttgtattgaacCCCAGTAAAATTGTCAGTAACCTAGgacttaacaaaacaaaatacggAACAACAGCAGGTCTTTCATAACTGAGCAGAAGCAATACTGGGAAGGTTTTGGGTCAGATTCAGTCAATTTCTCAGTCAGGtagaaatgtggaaaatgtCAATTCTGCGCTTGTCTCATGTAACATGTCCATACATGTTACATGTTGAGTGAGAGGCTCTGTCACATGACATGCTACAGTAGAGCAAATACTGTAGGTATTTatgggtatttaaaaaatatatattacagtacataCCAGAGCAGTCCAAATAGGTTGGAAGCCTAGGTCTGTgaccatattatttatttattagcaggccCTTATCCAGGACCATATCATGTGACTGCTTGGTGATTTAGGCTAGCTATCATTGAGCCTCTAGTACCTCGGACCTAGTACTCATGGCAAGTGTAACAATTCATTAGAGAAATCAAACGATTGCCACTGACTTGACCTCTTGAAAGAGTGCAACTCAAAATCaaagagaaattaaacatttttgaaatttgGGGGTATGATGAAGAGTAAAGGAAACTTTCAACTGAACAGCTTAACCCAAGTTGCTGATGTTTATAGAGCTGCAGAAATCAGTCCTAACCATtcggttttttgtttgtttgctttgttgtttttttggagtGCAGACTTATGCTTTGCATAATTCATTACTGGCTAGCTTTAATTAAAAGCTTATATGCCGCATGACAATGGATGCATTCAGAGCTACAGTGCTGGTCACTAGGACTTGGAAATGCTAAACATCCATCTTAATATGAGTTTTaggtgtatgtttttgtttattttaataattgaacatGACCTGTTTGGCAGAGAAGGAAAATAGTAGCATGCTAAAATTATAGAAGTGATTTTAGGTAAATATTTGGTTTGCTTTGTTCAATATGAACTGAGAACTGGATTGATAAACACCTTGGTCAGTAATACTGACTCACTAAAGTTGAAGGACCTGCAAATAGAGCAAGTTATGCAAAGATGTAGCTTTGTAAACCTGCCCCTCAATAGGACACATAGGTGTACGTACCTCTTTTTCTTATAAATTATCTTTAATTCAGCATGGTCTGCAGCACCACATAATATTATTAGGAAAATGACACCCTGATTTCTTTTAGTTACAAGCATTTTGGCCTGTTAGGGGACGAAACTGGGTGTATTAAATGTAAGTGTCTCACCACCAGTCCTTATGTCTGAAAAAGCTCTCCTGAAGAGCATGTGAATTttagtcaatcaatcaatttgtatttatttagaatagTGCCCTTTGTAttgtagccacagagtgctttacaaaccaaataaacagaacaaatacataaaccatgaataatgaaataaaataaaccatttggcAAGGAGGAGCTAAAAAACGAAAACTCTTACAGGATGGcattgttataggagaaaataaatatctggggCTTAAGTCCTAGGTTGCCTCCTCTCCGGGTAGTATAATaaccctgtttccactggcttaaatGCCTGGAgggttttgtggccggttaactatctgctgccagacatGGCCATAAGCATCCATCACCCACTGAGGaaagtgccgtgtgggatcacaaataaattagttttattagcagtaTGGAgtgaaacaatgactgcttacagttaatatctgagtgtattaaaaacttgccgaacacagatttcacaggaccaattgcagtgctgtgacttgttaaaaataaactgaaagacaATAATCAAAGCAGCcggttttattaatattttatgaataattggacggtgtttcaggctgttatcctgtgaatggtttgcaggtctgttgtTTAACAGCttcgcagagacaatcagtatgaagatgatttagttaacgtgtgcccatttacaagttaaattaatgaataaataaatacagcagatctgggtttccctctaaaacattaaggacatttaataattgcatccataaacgccatgactgaaacgtgcacactttatttaaattataacctgctatattgtagctgcttgtactgtatgattaattgtgaaacgtgtgtattttgtttcagctgtaacttgccctggttaaaaataatacggcaaaaagtgttgtttgcagttacaaatctgtagtaagagtaataagttaagggcgTCAAGTtgagccatttaaaatacatatctactatcacatatcttgatgatgattacaataataacaataataataaatagcaaatatttatttttattgttccacatggaaacgttttttTATGGTAACGTAATGCTtatctgaatataatgttgtctatacacgtttagctcttcctaatatctcttgacagaaatgtgtatgtattacgctgtttacaatcatgtaaagcagaaagaataaaatagacacaaaagtcctttccacgtcaggctatatcgctcgtagtgttgttttgtctttgcttttaaaactaaacacaaaccaaacccacaatcctTTTGCTCCTCCTTGCTACagtggcctggttttacaaaaagctctgggacgtgTCCAGCACGGCATGGTATGGTACGGCACGGGCGCTTAAGCCCGAGGCATAATTATATGATAgagcagcaagaagatcagaaagttcaCAGTACACAGAAAGTGGAACTGCTTCACAGTTCATTAAACTTGAAACATTTGTCCCAAAAACTGgtcaaaataagtaataatttaGTAGTTGGGACCTAAAAGTATATGCATTAAATTATAAGATATAAAATGACAGCGGGACATTTCTGAATATACATCAAGGTATAGTACCTCATCAGGTATGTTAGTGGCACTCTCTATCTTTCTTGCTCACATCGGGactcaaaacaaaactgctgaaCATGAATTAAAATAGGCTTCTAGGTTTATTCCTCAGCCAGTGCTTCATGAAATATATGTAgcataatgttttattcagtctccacagcattaaataaacactattCTAGAGTTTTCCCCACCATCTATAAATCCTCAGGTATTTAgaatttacagatttgttttccattgttgtCACATTCAAACTGAGATGAATACTCGACACTCCATGTATGTAAATCCCATGGACCCTGGCATCTTTCACTTGCAATATAAGTGTGCATTATTTGTCTAATAATGACAAAGGCTTTAGGTAAGCATGGCAGGGGTGCCCCAACCATGCCAACCACCCCAACGAATGCCATCTGTGGCCCCCCGGTAGTGTGAACGAAACACCGTCAGCagcacccctcccccacccacaCCCCCTGAATATTATAGAAACCCCGCTGGTGCCACCCCAAGATTTTCAGTGGCCCCATCTGGCCACAcctaagaaaaaaaatctgggtGCACCACTGAAGCATGGTGGAGATTTTATCCCACTAGATGTTTTAATACTTTTCGACTTACTGAAGTGCTGTGCCTCTGTGTCATACATAATTTTTCGTCACTGGAAAAAGAgaatatattcataaaactACTACGCTGTTAAATGAATCTTCAATTTAAAGTGAAAAAGGACAGAATGAAGAAAGGACATTAATAAATCCTCATTGCCAAAACAAGTTATTGAAAAAGCATTGCACTAACTTTCATAACAGGTTAAAGTGATAGCTCTTCAGCTTCACTGACAGCCTATTTTACGGCTGTAATAACTGCCACTCTCTGTCTCCTTTCTGTTTATAAATCAGCCTGATCTCCACATAATATATTCACAGCTTAGTATTCCAGTGtcacacattttgttaaaactacCTATACCATGCCAAATTGcaaggtgtttttttgtgtgtgtgtaacctgTAAGATAAGGACGTCttccaataaataaagaaatagaaataaaaataatatataatttaaatctgtCCCCAACATGAAATGGTCAGGTTTGAAACCTTGAGTGGCAATACACTTTCACTGAAATGAAAGTTTTGGGGCAGAAGGTTCAAGTAGTGagttgaataaaaacaaatctctc

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13863 SLC7A1, ATRC1; solute carrier family 7 (cationic amino acid transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13464 lncRNA downstream 593 4796827 ~ 4860892 (-) True G10867
TU13412 lncRNA downstream 220455 4639789 ~ 4641030 (-) True G10823
TU13410 lncRNA downstream 222826 4638450 ~ 4638659 (-) True G10821
TU13398 lncRNA downstream 238269 4622731 ~ 4623216 (-) True G10812
TU13392 lncRNA downstream 269408 4591820 ~ 4592077 (-) True G10806
TU13478 lncRNA upstream 16051 4903856 ~ 4907602 (-) True AMCG00016074
TU13491 lncRNA upstream 70274 4958079 ~ 4958278 (-) True G10883
TU13538 lncRNA upstream 105391 4993196 ~ 5065889 (-) True G10924
TU13540 lncRNA upstream 219112 5106917 ~ 5108966 (-) True G10926
TU13547 lncRNA upstream 693627 5581432 ~ 5581688 (-) True G10931
AMCG00016070 mRNA downstream 98136 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016068 mRNA downstream 196857 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016071 mRNA downstream 225858 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016072 mRNA downstream 258212 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016073 mRNA downstream 279189 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016074 mRNA upstream 16893 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016075 mRNA upstream 45019 4932824 ~ 5269754 (-) True AMCG00016075
AMCG00016086 mRNA upstream 1726900 6614705 ~ 6636697 (-) True AMCG00016086
AMCG00016081 mRNA upstream 1749527 6637332 ~ 6640537 (-) True AMCG00016081
AMCG00016084 mRNA upstream 1759502 6647307 ~ 6669012 (-) True AMCG00016084
TU13237 other downstream 941061 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1322292 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1826302 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 2150800 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3303741 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 5959029 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 5959126 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7435356 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 7974294 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile