RNA id: AMCG00016075


Basic Information

Item Value
RNA id AMCG00016075
length 1809
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00016075
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4932824 ~ 5269754 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGATACAATTGTATTCAACTAATGGCAGTAATGGAACATGCATATTATGCCAGCTTTGGATACCAGGTCACAAGTTTTTTTGCTGCATCCAGCCGCTATGGAAACCCAGAGGAGCTGAAGGAGCTGATCGATGTAGCGCACTCAATGGGGATCATCGTCCTGCTGGATGTAGTCCACAGCCACGCATCCAAAAACACAGAGGATGGCTTAAACAATTTTGATGGCACGGATTCTTGCTTTTTCCACTCCGGGATGCGGGGAGAACATAGCCTCTGGGGTAGCAAGCTCTTCAACTACTCAAGAACTGCCCTCCTTCCCCTGTGCCTGGGGAAACTCCACCCAGAGCACCGCCACCACCAAAGGAGCCTGCCACACCTGAGCtgcaaCTTCCGGAGGTCCACATGGGACAGCAGCAAGGGCAGTGATGGGGAAGGAGGAGAGAAGCAAACACTAGGAAGGACGGCTTTCAAATTCACACTCACCCCAGTCTCCACGGACGTGTCTGGGATGCCAGCGCTGTGCCGCCCTGTCAttgaaggaggaggaggctTTGACTACCGCCTTGCCATGGCCATCCCAGATAAGTGGATTCAGATTATAAAAGAGTTTAAGGATGAAGACTGGAATGTGGGCAACATCGTTCACACTTTGATGAACAGGAGATACGCAGAGAAATGTATTGCTTATGCAGAAAGCCATGACCAGCAGCAGCCCAAAGACAGGCTTGCCTATTATCCTGTTGACACAAGGAACGAGTTTGGCCACCCGGAATGGCTGGACTTCCCCAGGAAAGGAAACAACGAGAGCTACCACTATGCCCGGAGACAGTATAACCTGGTGGAGAGTGAGCACCTGCGCTACAAGCAGCTGTACAACTTTGACAGGGACATGAATTGGACAGAGGACAAATACGGCTGGCTAGCTGCTCCTCCTGTGCCCagATATAAAATTAAGCTGGACTCCGACAAGAGTGACTATGGAGGCCACCAGAGGATTGACCACAGCACTGACTTCTTCACGGAACCTGTCCCTTTCAACAACTGTTCCAACTCAATGATGGGCACCCTGAGCTACAGAGGGAAGCTCATCCTGATGGCCAACGCTGATGGACTACCAAGTTTGCTGACATTGAGAGCGTTCTGCACATTCCTGATGTATGGCTTCCACTTTCTGGTGTGGTTCTTCTGTGTGAAGGGGATCAGGGACACACACTGTGGGTTCAAGATTTTCACCCGAGAGGCAGCCTTACGGACTTTCTCCAGTCTGCATGTGGAGCGCtgGAACCGATCCCTCGACTTGAGTCACCTCATGATGGACATCGTGAAGATCGTGATTCCAGTGTATATCATGGCCCTCACTGAATACCTcCTGGCGTCTGAGATGCAGAAAAGAGACCGTGAAAACCAGGCACTGCTGAGTAAAATCAGTGCTCTTGAAGAGAAGtattgttttttgCATGTGTCCTTACAAAATTACAAGCTCTTCAAAGAACTAGAAGAAGCCAAATCGAAGATCAGAGTGCCTGTCCCAATTCCTTCGCCCCAACCACCCGGAGCCCGTGGAATACCCCTGCCCCCGCCGCACGGAGCCCCTGGAAtgctttataatcccctcacacCGGTCCCGGTCGCCGCCAACAAACCAGAGGTCCCGGTCCCGGCCTGCTGCCGCCAAACCAGAGGTCCCAGtcccgaaccagaggtccctgTCCCAGCCACCGCCGCCACCGCCGCCACCTCCGACGCCCAGCCCGAGTGCCCGGCCACCGCCGCCGCACCGCGCAACCTGGTTTCCTGTTCCCTTTAA

Function

GO: NA

KEGG:

id description
K00700 GBE1, glgB; 1,4-alpha-glucan branching enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13478 lncRNA downstream 25222 4903856 ~ 4907602 (-) True AMCG00016074
TU13465 lncRNA downstream 57813 4859058 ~ 4875011 (-) False G10867
TU13464 lncRNA downstream 71932 4796827 ~ 4860892 (-) True G10867
TU13412 lncRNA downstream 291794 4639789 ~ 4641030 (-) True G10823
TU13410 lncRNA downstream 294165 4638450 ~ 4638659 (-) True G10821
TU13547 lncRNA upstream 311678 5581432 ~ 5581688 (-) True G10931
TU13550 lncRNA upstream 476582 5746336 ~ 5746567 (-) True G10934
TU13551 lncRNA upstream 481164 5750918 ~ 5751334 (-) True G10935
TU13556 lncRNA upstream 571723 5841477 ~ 5841704 (-) True G10940
TU13568 lncRNA upstream 619834 5889588 ~ 5889916 (-) True G10952
AMCG00016074 mRNA downstream 2924 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016069 mRNA downstream 45019 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016070 mRNA downstream 169475 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016068 mRNA downstream 268196 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016071 mRNA downstream 297197 4626584 ~ 4635627 (-) True AMCG00016071
AMCG00016086 mRNA upstream 1344951 6614705 ~ 6636697 (-) True AMCG00016086
AMCG00016081 mRNA upstream 1367578 6637332 ~ 6640537 (-) True AMCG00016081
AMCG00016084 mRNA upstream 1377553 6647307 ~ 6669012 (-) True AMCG00016084
AMCG00016087 mRNA upstream 1466192 6735946 ~ 6773094 (-) True AMCG00016087
AMCG00016083 mRNA upstream 1513783 6783537 ~ 6787509 (-) True AMCG00016083
TU13237 other downstream 1012400 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1393631 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1897641 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 2222139 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 2921792 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 5577080 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 5577177 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7053407 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 7592345 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile