RNA id: AMCG00016076


Basic Information

Item Value
RNA id AMCG00016076
length 1514
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00016076
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 5048208 ~ 5108992 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGGAACGATTGCTTTTCTCCAGTCGCAGGTCTACGCTGGCCATTGTGGATACGGGGACTTTGGCAATGTGACTGCAGGCGCGGACGAGAATGGACAGTGTGTCTGCAAAGTGTTCCTGTCTGACAATACCTTTCCATTTCAAAAAGTGGAACAACTGCAAACTACATCAAGGGAGCTTAGCCTGAAAGTGGAGCAAGGATTTAGTGAGCTCAAAGTCTACGAAAGCAAACTGGCCATCTACGTCCAGAAGCTGATGAACCTGACGGTGCGTGTGGAGATAATGGAGAAGGAACCTGACAAGTACACACAGCTGGAGTTTGAGATGCTGAGGATTGAGCTTCAGGAGATGGAGAAACTGGTCACTGAGCTGAGACAATCTGTGAATTCTTCTGTCATATTTGACCATTTATATGTAGAGATCCGAAACATGACATTAGTGGTGAACCAGCTTGAGAGATATGACAAGAACAACCTGTTGGTGATTCGGCGGGACTTCATTAAACTGCAGAAGAAACTGGAGGACTGCGAGAAGTGGCGTGAGGAATCTTTCAAGCCTGAAATTGGATCCTGTAATCATGGAGGCATTACTAACGTCAGCGTGCCATACATAGTGCAGCTAAATGCCCATGTTAGTGAGGGTTACATTTATGGAGGATGGGGAAGAGATTCAAAGCCAAAGCCTGGCTTTGAGGAGATTTACTGGTATTCAGGGTATAGTAGCCCCTACACCAACAACATATACCTTTACTCAGACTACACCAACCTGCTTTTAAGAAACTCCTATAAAAATTGGGTAAATGACAACAAGGGGAATGGCAATAACAATGTCATGTATGGGAATTACTACTATTATAACTGCTATAATAGtggaaatatatgcagaataaaTGCAACAACTTTTAACGTTGAGACCAGGGTGTTGTCTGGCACGGCTTGGAACAGCAGGTTCTCTTACAGTTCTGCCACATATCAGGATTTTGACTTTGCAGCAGATGAAAATGGGCTGTGGGTAATCTATGCAACAGAAGCCAGTAAGGGTAACCTAGTCCTCtccaaaattaatacaaatacctTTTCATTAGAGCAGACGTGGGACACAAACTTATTTAGGCGAAGAGTGAGCAATGCTTTCATGGTGTGTGGAGTTCTGTATGCCACAAGACAACTAAACCTTTACACTGAGGAGATATTCTATAAATTTGATACACAGACAGGTGAGGAAAGTTATATTAGCATTCCTTTCAATAAGCAATATGAAGGATTTGTGTACCTTGATTACAACCCTGCAGATCAGTTGCTATACATGTATAGCAAAGGCTACTACATCTTCTACAAAGTTCAGTTCCAAAAACTGAAGCAACAtgcttaaatacatatatattcttaagAATGATTATTCACATACttaccaaacacacacatcagtaATTACAACTGTGTTTTTccttaaatgaataaataaaataatatgcaagcATCAAAACCTGTCTGAGTCTGTTCATCACACAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13444 lncRNA upstream 135790 4907806 ~ 4912418 (+) True G10853
TU13379 lncRNA upstream 460571 4586548 ~ 4587637 (+) True G10794
TU13384 lncRNA upstream 462722 4585234 ~ 4585486 (+) True G10798
TU13310 lncRNA upstream 670545 4376307 ~ 4377663 (+) True G10737
TU13309 lncRNA upstream 674487 4371487 ~ 4373721 (+) True G10736
TU13555 lncRNA downstream 732236 5841228 ~ 5841821 (+) True G10939
TU13652 lncRNA downstream 1626618 6735610 ~ 6744358 (+) True G11021
TU13694 lncRNA downstream 1843621 6952613 ~ 6956605 (+) True G11052
TU13711 lncRNA downstream 1881135 6990127 ~ 6990569 (+) True G11067
TU13714 lncRNA downstream 1881657 6990649 ~ 6990900 (+) True G11069
AMCG00016066 mRNA upstream 471789 4570191 ~ 4576419 (+) True AMCG00016066
AMCG00016067 mRNA upstream 494258 4532324 ~ 4553950 (+) True AMCG00016067
AMCG00016061 mRNA upstream 548254 4495818 ~ 4499954 (+) True AMCG00016061
AMCG00016060 mRNA upstream 570870 4470062 ~ 4477338 (+) True AMCG00016060
AMCG00016055 mRNA upstream 842894 4201763 ~ 4205314 (+) True AMCG00016055
AMCG00016077 mRNA downstream 1263407 6372399 ~ 6487517 (+) True AMCG00016077
AMCG00016079 mRNA downstream 1532666 6641658 ~ 6658898 (+) False AMCG00016079
AMCG00016080 mRNA downstream 1561314 6670306 ~ 6679037 (+) True AMCG00016080
AMCG00016078 mRNA downstream 1581761 6690753 ~ 6700886 (+) True AMCG00016078
AMCG00016092 mRNA downstream 1885004 6993996 ~ 7008772 (+) True AMCG00016092
TU13312 other upstream 620149 4427146 ~ 4428059 (+) True G10739
TU12970 other upstream 2277538 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 2286489 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 2286489 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 2560457 2485542 ~ 2487751 (+) True G10371
TU13602 other downstream 1545720 6654712 ~ 6661668 (+) True AMCG00016079
TU13604 other downstream 1555094 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 3959289 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 3990428 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 4114420 9223412 ~ 9226245 (+) True G11545

Expression Profile