RNA id: TU13602


Basic Information

Item Value
RNA id TU13602
length 3371
RNA type TUCP
GC content 0.62
exon number 4
gene id AMCG00016079
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6641658 ~ 6661668 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGGTTTTAAAGAAACAAGCCTTTCGTTTTGACACACAGTTTTATGTTTCCGGTTTTTGAAATGGTTTGTATTACTAATCTATGTAGTATTTGGATCGGAtggttcttttatttattaaacggCGCACGTAAGTGCTTGAAAGCTGTTCACTGAGAGCTGCTTCACTCTGTGATAAACGCTGTGAGGGAACGGTCGACCTCTACATTAAGTGAATGCAAAGCAAACTTGTAATCATTGTTGGATACGGTGTGTGTAAAGTGAATAGACACGTGCAGTTTCCACAGGTTCTGGACTTGGCTCCATTCTGCACTGTTAACTGCAAGAATATCGCTGAGGGAGAAACGAGGATGCTGTACAGCCTCTATGGGATAGTGGAACACAGTGGCACGATGAGGTCCGGTCACTACACGGCCTATGTCAAAGTGCAACCGAAGGACTACCTTTCGAAGCATTTGAATGGATTGAGTCCGCAAGTGAATGATGCTGAATTGGTCAAAGGCTCCTGGTTCCATATAAGTGATACAAGTGTCCAGGCTGTGCCCGAGACTAAAGTGCAGAACTCGCAAGCCTACCTCCTCTTCTATGAGAGGATACTCTAACTGACATTCAGGGGATACGACACAGAGGACTTGAGTTGCTTTGGTGACAGTGGGGTTACATGGCATGGCAGAACACTATACTGTTTCTACTATTGGATATGAAATGTATCCATACTTATCTGAGACGCATCAAATAGTGTGACACTGCTAAAGCACGGGGGCAGCCAAAATACAAATCCTTTGATGCATTCCGCTGCTTCAAACTCTTAAAGTGATTTTAGCAGCATTAACTGTGCATACACAAGCTTCCTAAGTGATTGCAGAAGGGAAAGTACTTTCATAGGAATCTGTTctggcaaattaaatgtattatgcttttcAATACAAAGGGGAACATGTAAAATAGCTAGTGTGGCAAGATCTACAGACTAAAAAAGCATTTAGCATGCTGACCTTGTTATGCACAATTAATTCTGCTAATGtgcatgttgttgtttgggAAAGGAACATGATGCATTAGGTAAAGTAATAGTTAccctgtatgtatatttaaaatgttataatttataaaaccaTTAAGGTAGGTAATTTGAATCAATTTCCAAataggaaaaaacatttgtatgaaatatgaaaagatttatttctgtaatattttatataacatggccaaaacaattaaaaaacacatgttttttaatacttgtggACTGTTGATTACTTActttcaggttgtaacaacaaaatgtgaaacattCCACTTATAGCCTATAGCCACTGTTATATTAAATCTTGGATGAACCCAATTTTTCTTTGATGGGACTGTGACCAGATAGTAGTCTTTATTGGGTTTTCCTTCTCAGCTCCATAAACAAATGCTTAAAATCTGGCATTCTTAATGATTGTTGCACTAAAATTCTAAATGTGGGAGTAATTTTCAAGCCTTGTCCaatttcagatttacataaaaTAGTACCAAGATGCCTTTTTCCATCTTATAACCTGACTGACCCAACCTTACCAGTCACTGTTTCAGAAACTATCATGCTTGTCTCTtcacatattcatattttaaacaaatttgatGTTAAATCAACTTTTAACCCTATATAAATACTTTCTAAAGCTTGTGTAAAAGTAAGATAGTTTAGctgtattttaaactatatagatcaggggttcccaatgtgcGGTCCTGGGGCCAAGTGtggccctcaaggatgtttgggGCGgtcccccaaagccaaccttcaacccccccttttctgaacctttactatatttttacactttctgaaaatgttctgttacaaattgcacatgtaatttggggaaaaataaGTTCTAAATGTTCCCTGACAAacgtataggaaataaaaaggtatgatttgggaccaatttaattttcatctgtggttcattttctactgtggctcccatcccatgcaacctccggaaattgaCCCTCCATCAACAGATATTGGGAACCGCTGATATAGATACTTGTACTACAACTCTCAAAATAGTAGTAGGAAAATAGAGTAGGAAATGTCTAATGTAGctgaagaaatgaaaatgacacaTGAGCTGCACAGGTTGAAGgtacatttttttcagttgttatATAAACCTGAGCAACATAATGTAGCGATTCAGAGGGGCAAATAACTGAACatactttaaaagaaacaaggTAAAGGGACTGGACAATGCATTAGTGATACTGTCCAAATCCTTGGCCTGCTCTTTTTGTCCATTATTGAATTATGGGATTTCAAAGTcctaatttaattacataagaTTTTAGGTTTGCTCACATGCATCCAGGGGAGGTGTCATAGGCTCATTGGACATTTCTTGCTGCTGCAGAATTATTTAATACATCAGCCttttttacattgattttgttttacttaggAAGATCttagaatacaaaatatattaataaatatgagTAAGGGTCCTTAATTCTGTTTTACTGCAGGCTTGTTCTGAAATTCAAGAgcaatcatttcaaatatttctttagcaggagaaaaacaacaccGAAGGAAATACATTCATGAAAGACAGAGTAGGGCCACATTCAGGCATTTCAGTTGACTTTTTCACTTTTAGACATCTGCTAAACAACCTAAAATATAACTTGAGCCACCTGTGGTATTgggttgtgtgacaaaactgctcattttagagtggccttttattggccccagcacaaggtgcacccgtggtttaatcagcttcttaaTCCATCCACCTCAGAAGTGTGGCAGATCATCTTGCAAAAGCAGAAATGATCACTGACAGGCATGTAAACAGATGTGTGCATAGAATTGAGTGCAATTTGCAAGATTCCTGGgatctttaatttcagctcatgaaacacgggacatgtttatattttttgttcagtttatggCAGAAAGTCACATTAAAGAAGCCAAAAACCAACCCTGACAGCTCAAGTGCCTTTTattgggagggaaaaaaaaaaaaaaaatgaaagagccAGCCTTTAGAGCTTCATATCACAATGCATGGTTTTGTCCAAGAAACATGAACAGCAGGAAGTACATCAGATTAAATAAGAGGCAAACAAAAAAGGACTGTTAAATCAGTTGGTTTGTGTCAGTCCAAGTATAAACAAGGTCAACAAAGGGAGAGAAACTAGGAAGATCTTAATCTTGGTCTTCATCCCAGTCTTTCTTTCCTTGTGGGGCTTTGGGCCCACCTGCTGGTTTGGCCATGATGATCTGTGAAGACAAAACCCACATTACTGCATTGTTCACAAAAGGTAGCAGGCAGACACAAGCGCTGAGGAATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13555 lncRNA upstream 812891 5841228 ~ 5841821 (+) True G10939
TU13444 lncRNA upstream 1742294 4907806 ~ 4912418 (+) True G10853
TU13379 lncRNA upstream 2067075 4586548 ~ 4587637 (+) True G10794
TU13384 lncRNA upstream 2069226 4585234 ~ 4585486 (+) True G10798
TU13310 lncRNA upstream 2277049 4376307 ~ 4377663 (+) True G10737
TU13652 lncRNA downstream 73942 6735610 ~ 6744358 (+) True G11021
TU13694 lncRNA downstream 290945 6952613 ~ 6956605 (+) True G11052
TU13711 lncRNA downstream 328459 6990127 ~ 6990569 (+) True G11067
TU13714 lncRNA downstream 328981 6990649 ~ 6990900 (+) True G11069
TU13726 lncRNA downstream 360479 7022147 ~ 7024706 (+) False AMCG00016091
AMCG00016077 mRNA upstream 167195 6372399 ~ 6487517 (+) True AMCG00016077
AMCG00016076 mRNA upstream 1545720 5048208 ~ 5108992 (+) True AMCG00016076
AMCG00016066 mRNA upstream 2078293 4570191 ~ 4576419 (+) True AMCG00016066
AMCG00016067 mRNA upstream 2100762 4532324 ~ 4553950 (+) True AMCG00016067
AMCG00016061 mRNA upstream 2154758 4495818 ~ 4499954 (+) True AMCG00016061
AMCG00016080 mRNA downstream 8638 6670306 ~ 6679037 (+) True AMCG00016080
AMCG00016078 mRNA downstream 29085 6690753 ~ 6700886 (+) True AMCG00016078
AMCG00016092 mRNA downstream 332328 6993996 ~ 7008772 (+) True AMCG00016092
AMCG00016091 mRNA downstream 360509 7022177 ~ 7024851 (+) True AMCG00016091
AMCG00016104 mRNA downstream 385452 7047120 ~ 7053548 (+) True AMCG00016104
TU13312 other upstream 2226653 4427146 ~ 4428059 (+) True G10739
TU12970 other upstream 3884042 2759347 ~ 2770670 (+) False AMCG00016030
TU12971 other upstream 3892993 2759347 ~ 2761719 (+) False AMCG00016030
TU12972 other upstream 3892993 2759347 ~ 2761719 (+) True AMCG00016030
TU12903 other upstream 4166961 2485542 ~ 2487751 (+) True G10371
TU13604 other downstream 2418 6664086 ~ 6665548 (+) True G10981
TU14219 other downstream 2406613 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 2437752 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 2561744 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 2897796 9559464 ~ 9591649 (+) True AMCG00016159

Expression Profile