RNA id: AMCG00016086


Basic Information

Item Value
RNA id AMCG00016086
length 6987
RNA type mRNA
GC content 0.48
exon number 30
gene id AMCG00016086
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6614705 ~ 6636697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGCTGGCATACGGGAGTGGATTTCATGTGTTTCAACTCAGGCCGTTGGCGTTTGAAAAGACAGCGAGTACATTTCTTTCGCTGTTAACCTGTCCCATATGAAAACATGGGAGGGAAGAACAAGCAGAGAACCAAAGGAAATGTTCGGCCCTCCAGTAGTGGCAGGGCTGCAGAGTTGCTGGCCAGAGAGAGGGGTGCTGTACCTGGGTTTGTGGGCTTTGGTACATCCTCAACTGAACTGGGGTACGTCCCTGCTGTTTACGGGGCCGAGGAAATTGACAATCTGGTAGATGCAGATTTCCGCATGGTTTTGCGCAAACTGTCTAAAAGAGACACAGTGACAAAATTAAAGGCTGTGCAAGAATTTGGTGCAATgtgcaaggagagagagacggagattGTCAAGGGTGTTCTACCATACTGGCCTCGGATTTATTGCAAAATTTCAGTGGATCATGATCGTCGAGTCCGTGAAGCCACACAGCAGGCTTTTGAGCAGCTAATTCTTAAAGTCAAGAGGAATCTGGCCCCATATTTGAAAAGCATCATGGGATACTGGCTGATCGCACAATGTGACACCTACTCTCCTGCAGCTTCAGCCGCCAGCCTGGCATTTCAAGCTGCTTTTCCACTAAGCAAGCAGTCGGAGGCTCTTGCCTTTTGCAAGGAAGAAGTCCTGAATaTTCTCCAAGATAATCTGCTAAAGGAAACCCCAGAGACCCTTAGTGACCCCCAAAGTGTTCCAGAGGAGGAAAGGGAGGCCAAGTACGTCCGTCTGGTGACCAGCTCCCTTTTAGCTGTGAAGAAGCTCCTTGCCACGCTCCCGAAACAGGAAATcgacacactgacagagaggCTGAAGCATCTCATCTCACAAAACAAATTCTGGAAGTACAGCAAGCACAAGACCCCACAGATCCGAGGGGCATTCTTCGAAGCAGTGGCCACTCTTTGCGAGCACACGCCAGAGCTGATACAGGATGAAGCCAGCCGAGCCTGTAGCGCTGTCCTGCTGAGCATGGACGACACGGACCCCCTCGTCCTGCCCTCTCTGTGGGAGGCAGTTTTACACATCCTCTCTAATGTCACGgactGCTGGAAACATGTTAACTCCAGAAAAGGAGTGATGCCCAAACTGTGGTCATTGCTAAAAGAAGGAGGCAGAGGATTAGCTACAGTCTTGCATCCCAATTTGCTGCCTTTCATTAGTAAATTACCAGATGAAGTGACCGACCCAAAGCTGGAGTTTTATAACACTTTCTTCACGTCAATCATCCTTGGGTTATCAAGTGAGCGTGCAGTGAGCAGTCCTTCAGAATGTGCTGCGATCGTCTTTGCAACCCTCGAGTGTCTGCGCTTCAGTCTTCTGCAAAATGCCAGTGAAGAAGAGCAAAGCAAGAATATACAGCAGATGCTCATCACTGACCAAATCACAGACATGTTGGTTTCCTGGGAGAAACGGGACAACTGTCTCAGTGACAGCTCCTCTGGGAACACTTTCCACAGGCTCCTGACAGACTTCTGGGATGGGCTGACAAGGCTCTGCATCCAACAGGTGGACAGGACAGATGCAGATGAAAACGCACTCTCTGGGGTCTCCACCTTATTGCAAGTGATGCAGAACCCAGCGGAGAGAAGCATAGGGGGGAAGCAGGGCAGGAAGAAGGGTGTAAGGATTTGCTTCTCCGATCTGGAGGGGTCTGATGCAAAGGTGGAAGGTGGTAAAGACCAGGAGGTGGTGGAGAAGAACAAGTGTGCACCACTGGCTGATTTCTCAGCAGGGTCTGGGTTGTCTCCCTTGCAAAGTGGGCACTTGGAAGACCTCGTTTGCCATTTGGCTGAACTGAACATGGTGTATGTGAACGAGCAGGACTCTGAGAAGCACTTGAGGTTCCTCTCCCTGCTCATCAGCTCCTTCCCCTCACGCCGGCTTTTCGAAGTGCTGCTGGATTCCCGTGCTGCTGGAGCTGAGACCACCCTGGGTGGAGGCGTTGGGCAGGAGAACACAGTCACTCAGAACCCTGCTGTCCAGTTTCTCCTCCAGAAAGTTGTGGTCTGGCTCCAGGAAGACCACAGGAAAGACACCGACTTCTTGGTCAATATGGTCTTCAGTGTCCTGCACTGCTGCAACAGCAAAGAGGAGAGAAAGCAAATTCTGGATCACATCTCTGAGatggACCTTAAATGGAGTATCCTACTTCAATTCATCCAGAAGGCCTGTGCTGACCCAGCTAAGTTCGAAGCCACGTCGGGGTGGCTGAAAGGAGATGTGCTGGGCGAGAAGTTGGTGAAGTTGGCAGAGGGTCTCTGTGACATGGGGCTGAAAGAAACCGCTTCTCTGACGCCCTGCCACTCGGACAGCTGGGCTTTAATCAGTTTGGCCCTCTCACAGCACATTCACAATGAATCTCTCATCGGCGAAGCTTACGTGGAGAAAATCATCACGAAGCTTCATGCCACTCTGTCGAAAGCCAAAGACCTGTCGGACGCCGGTAACATTGAGCCTCTGGTGTCCTTCATCTGTGACGTGGCCTCAAACTTCTTCTGCTCTGTGAAGGACTGCCTGCTTCTGTCGTCGGCCGAGGATCTTCTGCTCACCGTGTTCCAGCTCTGTGCTCAGGGCCAGGATGTCACTCGCTTATCAGATTCCCTGCTGCAGAAGCTGAGCCACGCTTGTTCTGCTGGGGTTCACTCGCTGCTGAGTCACTCGGAGATGGAATTCACCGAGGGGACCTTCTTGCACGGCGCTGCCCTCTGGGTTAAGAAACAGATTCTGAGTTCATCGTTTGGTGTTAAAAGCCTGCAAGTACTGGTGGCAGCTGTGCAGAGCCTGGCAGAAACCCTCATCAAGACCAATCAAGCCTGCTTTAATCTTTTGGAGAAATTCATCTGCTGTTTAACGCCCACTGACCTGGAATGGAAGAAAATGAGACGGGCGCTACCTccacagTGGCTGAAGGCCCCTCTGTTGTCCGGCAGACTCAGGGTGACCTGTGAATATCCTTGCATGGACGTGTGGAAGTTCCGTGCCTCCCTCAATATTCCCAGTCACCTCTGTGCCGCTGCACTTTTAGGAAGGGTCATCTTCACCACTCTGGACTTGGAAGACTGTCGCAAGAAACACTCTCTTCATCTCTCTGAAATGCAGAACACCAAAATCCTCTACGCCCTGCAGTGGTGTGAAGAAATGGAGTATTTGCCAGCTGTTGTGTCAGAGTACCATGGGATGCTTCAGGACATGAACGTAACCCAGGAGAGAATAAGAACGGAAAGCACCATGTGGTGCGATGTTCTAGAAACCCTTTTTTCTAGGTCCTTGCAGGAGGGTTCGTTGTGGGCTTTGacactgacaaaatacattgaaagccGAACAATCAGTGTTTCTGACATTAAGCGACTCTATGGAACTGTAGAGAGTTTCTTCCCTCTGAATGATCAAAACCTCTGCACCATTCAAGCCCTCTCTTCAATTCTTCCGAAAGAGGAAAAAGAATCGCTAATTGCTCTTTCGGTGGCAGAACTTCTCAATTGGGAGGAGACGGATCCCTCCAGCATTCGCAGTGGGCCTGGGTGCCTCGCTGTCCTGCATTGCTGCTTCAGATGTGAAGCCACTGCCGATCAGGAGGTTTTACTGGCGGTTCTGATGACAATGATGCAGTGGCGGAATGGCAAGGAggaattctttatttttagctcTGACCTAAAGGAGGCTTCTCCCAGTCTACTGGCTCTCAATGTGGAAATGATTCGCTTTCTGAGCTGGCTGGCAGGTCACTCTCTGGCTTCCCTGAAAGACACTCACTGGGATTTCATCCTCTGCTCTATGCTGTCTTGGCTGGAGACCGCTAGTGAGAACACGGCAACGTACTGGAATCCCTGGGTTCAGCTGTTTGTGTGTCAGACGTGCGAGTTAATTGTGGTGCTGAGTGAGTTTTTCAAAGCGCCCCCGGCCGACGTGGTGCCCAGCCTGCCAGTCAACCTGATGGGTGAATGGGAAGAGTTCTTTACCGTAGGGCTACACAGTCTGCTTCTGCCACTGCTGGTGAAGATCACAGAAGAGTTCACCGAGCCGGATGATCCCCTATTCCCTCTTCCGGTTCTGAAGTCTTTAGGCATCGCTCTGAGTTACATTCCGCTTCAGCAGCTGACAGACAACAAACTGCAGCCGAAATTTGTGGCGGGCCAGAAAACGAACCTACCTGACAAACTGCAGACGTTACTGAACACCCTGACACCGCTGCTGCTGTTTAAAGCCAGGCCCGTCCAAATCGCAGCGTTCCACATCCTAAACAAAGTGATGCCGCAGCTCCCAGAGTCTGACAGTGACAACGCCAGATctgaggatgaggaggaggaagaaccATGTCTATCACCGCCCGAAGCCATGATGTCAATCCTTGCTGCCGTGGAGGAGCTACTGGATAACATTCTCGGTGGAGTTCAGGTCGGCGAGTTTGCAGTTGTCCAGCCCTTAAGTGATGAGTACTGCTGTGTACTGGGCTATCTGCTGACGTGGAAGTTGATTTTGACTTTCTTCAAGGCTTCTTCCTCTCATTTGCGAGTGCAGTATTCCCTTTATCTGCGTAAATGCAGATCTCTGCACAAGCTGCTCTTCCACCTTTTCCGTCTGATGCCCGACAACCCGCTGTACCCCGGTCAGATGACAGAGCCAGCTGGCAAGGACAGCAGGACCTTCTTCACCGAGAGCCTACATCTGTCTGTGCAAAAAACAGACGGTTTGAACTGGGAGATTCCCCACTTGGCCTGCTCAGTCTACTACAGCACCCTGAAAGACCTGCCAGCCATGGTGCGCCTGTGGTGGAATGGCCAGGAGAAGCGTGTCTTCAACACCGTGGACAAATTCACCAGCAAATACGTCAGCAACGTGCTGTCCTCCCAGGAGATCGCGTCAGTACACACAAGCACCCAGACGTTTGACAGCATGACCGTGAAGGCTCGCTCTACCACCCGAGAAGTGATTGCCACCTACTCCGTGGATGATATATTCATTGAGCTGGTCATCCAGCTGCCGCAGAACTATCCTCTAGGCTCCATTTCTGTAGAAAGCGGCAGACGGGTTGGAGTTGCCGTTCAACAGTGGCGAAACTGGATGCTTCAGCTCAGTACTTACCTCACCCATCAgAACGGCAGCATCATGGAAGGCCTGGCGCTGTGGAAGAACAACGTTGACAAGCGCTTTGAGGGCGTGGAGGACTGCATGATCTGCTTCTCGGTCATCCACGGCTCTAATTACTCTCTTCCAAAGAAGGCCTGCAGGACCTGCAAGAAGAAGTTCCACTCGGCGTGTCTGTACAAGTGGTTCACTTCCAGCAACAAGTCAACATGTCCGCTGTGCAGAGAAACATTCTTCTAATCTGTCATTCGGAGTGGATATGGAGGAAGGGTCtggttttgtatatttgtaaataccGAATCTAACTGAACCTATAGTCACTATAATTTGAGGATGGCTGATATCGTTTTTCCCAGTCCTTGGGACACCTTGTCTCCTTaggtttttgttccatttgAGCTCTTTATTACTGTACTACACGTGTGcctagatttttgtattttaatctgtaaCCGTTGTGAGCTCTTAAGGTTGGGCAGGACATTAGCATTAATCCTTTCCAAATACTGGATTTCACATCATTTCAATTAGAAAGGTGTATTGAATTCCACCAGCTGGGTTCAAATAGCTATGTTGGATCAACAGTTACTTTTCAGAAATTAAGAATTGAGtcttgtttattatattttgggGCAACTGTAAACTGAATGCAGTGTATTTCCGAAATGTAGGACTGAGAGATAATTACAAATATGCTCACTTGCTCCCAAACACGATTACACAAGGGGAATCCTAAGGATTGGGTAGGGGAATTGGGGTTAAAATGATTTGGTCTTTTCTTAATTGGGAAGCCATGAAATACCAAGAAGTAAGTGATCTATATTGATCAACTGCatggattaattaattcatcagTGATTATACTTAAAACAGTGAAAGAATCcaaagtttttaaaacaaaattataaagaacatgctttcttcattattttttgcacatccaacttctgaaatgtaaaagcTGCATATAGAGAGAAGCTTTTGGAAAGCACTCATTAGAACCATGCAATTGCTTTGATGACAAGGGACTATTTTGCAATCAAATTGTGTAGCAGTTAACTAGCCGAAAATGCATCTGTTTAAATCCTGAGACTCGTCCAATAAATGTCCCTTGTTTGATACATAAATGTGCCCTCTTTTCTTACCTTACCTGTTGGTGACTGTTTTCTACTACTGGGTCCAGACAGATGGTGCCCATCTAAGCAGGTCTTTGCCTGTTTTCATCCGGCACGGTGGGAGGTAGTACAGTGCACACCTCAGAGTCTTTCCCTCCCTGTGGTAGAATGGCTTATATCTCTTACAGTGTAATGTTgtgaaacaaacagaatatCTGGAACTTTATTGTAATCCTAGCTGCCTTTGAATTAACCAATGAATTCCCAGTGCGTTCACTACACACTCCCTCTCAGTATTATTAAACCTTTATAAGTTTGTggttgacacacacacaaaagtttGAGATTCTCACTCAGTACCTATACATGAGAGCGGGACATGGGGAGTGTTATCTTTGGCTTTGCAGAACAGTTGTTTGTTCTTGTGAGAAATCTGCAGGAGAGTGccaagatttttatttttgtatattttagcTGCTGAGGTAGCTGTTATGTAAAGAATACTTGATATATGGAACGATCAAGCGTGTCCTTTCACAAGACAGCATTGTCAAGATGAAAACAGCACTTGATCAAAGACTGGAGGGCCAGGATATTGTCTAtgatctgtaaatatttaatagtaTCCCTGAAcgttagaagaaaaacaaaaaatcacaaaatcacaaGGTGAACTAAAGGTTACACTGCttgaaattgatttgatttaaaaaaaaaaaaaaaaaaaaaaaaaaata

Function

GO: NA

KEGG:

id description
K22377 LTN1; E3 ubiquitin-protein ligase listerin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13572 lncRNA downstream 391476 6222863 ~ 6223229 (-) True G10956
TU13568 lncRNA downstream 724789 5889588 ~ 5889916 (-) True G10952
TU13556 lncRNA downstream 773001 5841477 ~ 5841704 (-) True G10940
TU13551 lncRNA downstream 863371 5750918 ~ 5751334 (-) True G10935
TU13550 lncRNA downstream 868138 5746336 ~ 5746567 (-) True G10934
TU13884 lncRNA upstream 983001 7619698 ~ 7619997 (-) True G11215
TU13885 lncRNA upstream 983943 7620640 ~ 7620853 (-) True G11216
TU13891 lncRNA upstream 1044214 7680911 ~ 7688962 (-) True AMCG00016110
TU13918 lncRNA upstream 1235720 7872417 ~ 7872769 (-) True G11243
TU13922 lncRNA upstream 1330374 7967071 ~ 7967305 (-) True G11247
AMCG00016075 mRNA downstream 1344951 4932824 ~ 5269754 (-) True AMCG00016075
AMCG00016074 mRNA downstream 1684805 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016069 mRNA downstream 1726900 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016070 mRNA downstream 1851356 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016068 mRNA downstream 1950077 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016081 mRNA upstream 635 6637332 ~ 6640537 (-) True AMCG00016081
AMCG00016084 mRNA upstream 10610 6647307 ~ 6669012 (-) True AMCG00016084
AMCG00016087 mRNA upstream 99249 6735946 ~ 6773094 (-) True AMCG00016087
AMCG00016083 mRNA upstream 146840 6783537 ~ 6787509 (-) True AMCG00016083
AMCG00016089 mRNA upstream 180029 6816726 ~ 6829522 (-) True AMCG00016089
TU13237 other downstream 2694281 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 3075512 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 3579522 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 3904020 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 1554849 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 4210137 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 4210234 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 5686464 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 6225402 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile