RNA id: AMCG00016087


Basic Information

Item Value
RNA id AMCG00016087
length 2462
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00016087
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6735946 ~ 6773094 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGATACGCATGCAGGAGCTGATCAAAGCACCATCGCGGTACaacatcaaaattaaaatacgaCAGCTTCCAACGGGGAATAAGGACGCTAGACCGCTGCTGAAAGAGATGAAGAAAGGGAAGGAGTTCTATGTGATATTTGACTGCACGTACGAGACCGCGGCAGACATTCTGAAACAGATTCTTTCCATGGGGATGATGACAGAATACTACCACTACTTTTTCACCACTCTGGATCTGTTCGCTTTGGACCTGGAACCATACCGCTACAGTGGAGTGAACATGACAGGCTTTCGGCTTCTCAACATTGACAACTCACAGGTGGCGTCTGTGGTGGAGAAGTGGTCCATGGAGCGCTTGCAGGCCCCACCCAAACCTGAAACTGGTTTACTGGATGGTATGATGACAACTGAGGCTGCCCTGATGTATGACGCAGTGTACATGGTCGCTGTGGCATCCCAGCGCTCCACTCAGATGACTGTCAGCTCCTTGCAGTGTCACCGACACAAACCGTGGCGATTTGGACCGAGATTCATGAACATGTTTAAAGAAGCACAATGGGACGGTTTGACAGGACACATCACCATCAATAAAACAGATGGTCTCCGGAAAGATTTCGACTTGGACATAATCAGTCTCAAGGAGGAAGGGATAGAAAAGCCTGCTGGTGATCCCAATAGCCGTCTAAATAAAGTATGGAAAAAGATTGGAGTTTGGAACTCAAACAGTGGCCTTAACATGACAGACAGCAATAAGGAGAAATCAACTAACGTTACTGACTCCATGGCAAACAGGACGCTAATCGTGACTACAATTCTGGATGATGCAGTGGACGGGAGGAGGTTATCGAGAGAGATGATGTTTGGGCCCGTGACCTTTCTTAGAAGCCTGTGGGGTACTCCCTATCTGAGCAGTGTAAGAGCTGACCTACTTTGCCATGTCTTACAGGAAGACCCCTACGTCATGTATAAGAAGTCCGACAAACCTTTGTACGGGAATGACCGCTTTGAAGGCTACTGTCTGGACTTGCTCAAGGAGCTGTCCAATATTCTGGGCTTCTCATATGAAGTCAAGCTGGTCTCGGATGGTAAATACGGGGCCCAAAACGACAAAggggaatggaatggaatggttCGAGAACTGATAGACCATATAGCGGATTTGGCAGTGGCACCTTTAACCATAACATACGTGAGGGAGAAGGTGATAGATTTCTCGAAGCCGTTCATGACCCTGGGTATCAGTATTCTCTACCGCAAACCTAATGGCACCAACCCGGGTGTGTTCTCCTTCTTGAACCCTCTGTCCCCTGATATCTGGATGTATGTTCTCCTGGCTTGCCTTGGCGTCAGCTGCGTGCTCTTTGTCATTGCAAGGTTTACACCTTATGAGTGGTATAACCCCCACCCGTGCAATCCAGACTCTGATGTGGTGGAAAACAATTTTACTTTACTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAGCAAGGATCAGAACTGATGCCCAAAGCACTTTCCACCAGAATAGTTGGAGGAATCTGGTggttttttactttaataataatatcgtCCTACACTGCTAACTTGGCTGCCTTCCTGACTGTTGAAAGAATGGACTCACCAATTGACTCTGCTGACGATTtagcaaaacaaactaaaatcgAGTATGGGGCTGTTAGAGATGGATCAACCATGACCTTTTTTAAGATGTGGGCATTCATGAGCAGCAGGAAGCAGACAGCCTTGATAAAAAACAATGATGAAGGCATTCAGAGAGTCCTAACCACTGACTATGCACTATTGATGGAGTCCACCAGTATAGAGTATGTCACGCAGAGAAACTGCAACCTCACACAGATTGGGGGCTTGATTGACTCCAAGGGCTATGGTGTGGGGACACCGATAGGTTCCCCCTACAGAGATAAGGTCACAATTGCTATCCTTCAGCTACAGGAAGAGGGCAAATTGCACATGATGAAGGAGAAGTGGTGGCGGGGCAATGGCTGCCCAGAGGAAGACAGCAAGGAAGCCAGTGCTTTGGGTGTGGAAAACATCGGGGGCATTTTTATTGTACTTGCCGCAGGACTTGTGCTTTCTGTCTTTGTAGCCATTGGggagtttatatataaatccagGAAAAACACGGATATTGAACAGgccttttgtttcttttatggAATGCAATGCAAGCAAACGCACCCTTCCAATTCCACCTCTGGAACCACCTTATCCACGGATTTAGACTGTGGGAAGCTTCTCCGAGAAGAGCTGGGGATGCGACCTCAGCATTCAATTCACACTTGTATTTCTTTTAGTGCTGTAATGGAGGAGCTTGGCATCTCACTTAAGTGTCacaaaactgtaaagaaaagGTCGAGAACCAAGGGAAGAACAGGATTCTCAAGCATTCTATTGTGCCATCACAAACGCATTCTGAGGAGAGAGACCATGACA

Function

GO: NA

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13572 lncRNA downstream 512717 6222863 ~ 6223229 (-) True G10956
TU13568 lncRNA downstream 846030 5889588 ~ 5889916 (-) True G10952
TU13556 lncRNA downstream 894242 5841477 ~ 5841704 (-) True G10940
TU13551 lncRNA downstream 984612 5750918 ~ 5751334 (-) True G10935
TU13550 lncRNA downstream 989379 5746336 ~ 5746567 (-) True G10934
TU13884 lncRNA upstream 846604 7619698 ~ 7619997 (-) True G11215
TU13885 lncRNA upstream 847546 7620640 ~ 7620853 (-) True G11216
TU13891 lncRNA upstream 907817 7680911 ~ 7688962 (-) True AMCG00016110
TU13918 lncRNA upstream 1099323 7872417 ~ 7872769 (-) True G11243
TU13922 lncRNA upstream 1193977 7967071 ~ 7967305 (-) True G11247
AMCG00016084 mRNA downstream 66934 6647307 ~ 6669012 (-) True AMCG00016084
AMCG00016081 mRNA downstream 95409 6637332 ~ 6640537 (-) True AMCG00016081
AMCG00016086 mRNA downstream 99249 6614705 ~ 6636697 (-) True AMCG00016086
AMCG00016075 mRNA downstream 1466192 4932824 ~ 5269754 (-) True AMCG00016075
AMCG00016074 mRNA downstream 1806046 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016083 mRNA upstream 10443 6783537 ~ 6787509 (-) True AMCG00016083
AMCG00016089 mRNA upstream 43632 6816726 ~ 6829522 (-) True AMCG00016089
AMCG00016090 mRNA upstream 58028 6831122 ~ 6833591 (-) True AMCG00016090
AMCG00016082 mRNA upstream 74712 6847806 ~ 6861382 (-) True AMCG00016082
AMCG00016085 mRNA upstream 102352 6875446 ~ 6897876 (-) True AMCG00016085
TU13237 other downstream 2815522 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 3196753 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 3700763 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 4025261 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 1418452 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 4073740 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 4073837 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 5550067 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 6089005 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile