RNA id: AMCG00016088


Basic Information

Item Value
RNA id AMCG00016088
length 2474
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00016088
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6952612 ~ 6958966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACACGACCTTTGTCTCGATTGCGCTTGCGTGAGGGCGGGCGGAGTGAGTGCGCAGATTGAGCTCTGATTGGCGGCGCTGCGGACGGGACTCTGTTTGGGTTATTTCAACACAGAGGCAGGAGCGAGTGTTGCAGGCTCTTCGTTTCGTAAATCAAGTTCAAGCAACATGGCGTTGAAGGCGGTGTGTGTACTGAAGGGTGCCGGCGAAGTCTTCGGAACTGTCCACTTTGAGCAGAAGGATGGAGGGGCACCTGTTAAACTGACAGGCCAGATTGTTGGATTAACTCCAGGGAATCATGGCTTTCATGTTCATGCATTTGGAGACAACACCAATGGCTGTATAAGTGCTGGCCCTCACTTCAACCCACACAATAAAAATCACGGCGGTCCTAAAAGTGAAGAGAGGCATGTAGGTGATCTTGGCAATGTTGTGGCTGGAGATGATAAAGTCGCAATCATTGACATTGAGGACAAACACCTAACCTTGACTGGACCATATTCCATCATTGGACGAACAATGGTGATCCACGAGAAGGCCGATGACCTTGGCCAAGGGGGAGATGATGAGAGCCTCAAGACTGGCAATGCTGGTGGGCGGCTGGCCTGTGGGGTCATTGGCATCGCCCAGTGAGGAGAGCTGCAGTCCCAAAGCACTGGAGCTACAATGTAGGCGACCAATNNccccccccccccccaaaaaaaaatgtaaaacccttgaagGTAGTTCACCTTTTCATAAATCGctaatgttaattaaaaccatAGTTGTAATTTTTGTCCCagtgtttaacatttttttgttgtgaaGTCTATGTAAAAGTCATTGTCTGAAACAACAAACACCTGCAGCATTAAGGGATGTTTTTTCCACTCTTTGCTGTACACCAAATAAATATTGACCACTgcaacagtgtttttttctttgtatccaTCTAAtgtagtttctgttttttcaccttttgtatAGGAGTTAAACTTGTAGTggctttttaaagaaattctACACTTCGAAATGTCTTTAAATTGATGTTTCTAACTTGGTAGGATCGATCTTGCGTAAAGAACAATTCAATCTTCTAatgcccatttttttttttttgcctgtagAATTCAACCTTTTGAAGTAATGTAGCTGTATTTTGACAGCAGTGACCTGCTGTAATTCCCTTCAGGTTCTGCATGTCAGGGGAATGCCTCATGCAAACGTCATATTTCAACATGGCTGGTTTGGATAAAGTTAGAAAGTACTGGACATGTGTCCAGAAGACTGAATTTGTTAACAAATCTGGAAACTTGATATCCATGCAATGTCTTATGTAAACTCTTGGTGGCGCAATTCAGACAATCTTAAATTAACCAGTTGATGGCAGTGGATCTTGGTAGTTGCCTCCTTCAATAATAAGTGTGAATTAACTAATTGTAGCAATTGGTTTTTAAAGGTATATGAACTAAGTTGTAAGAGGGATTGCATTTTATACACCCTTTTGGAATTTTCTCTAATTAGCCTTTTTGGCTTGTATTTTAAAGGGCAACCTGAAAATCTCAAATGTCCCACTATGAAACCCTTCCTGGTAGTGCCTTTTAAATGGGCaagaaacttttaaaatctgcattaCAGTATATGTCAAATGCCAAAAAAAGTGCCTGCTGAAGCAATAACATTTGGTCTCTTTAAAGCTCTTTCTGGCTGGTTTCAGTTTAGGGgcactctacctaaaataacagtGAGGAGTCCATTTCTTGGTTTGTACGAAGATGATGCTTGTTGGTGTTCAGATGGCAAACCACTACTGAAAATACTTGTTGGGTAGGGACCAGGGAGGTTGGGTACCTCTGGACCAGGGAATCCATAAGAATTCCCTTTTACCAAGAGAGGGGGGCACTGTGCTGTGGGATGTGTTTTCCTGTCATAGTGTTGTAAGGTACTTCCTACTATGGATCGTAAAGATGATATTGGGTTTGTTTAAAGCGTCCAATTACTATATGAACCATTGGAGAGGGTACTGTATGATGGATACGTTTGCCATTCAATTGAACATTTGAGGTGCCATGGAAGTCTCCAAAAAGGTTGCAAGTAAGATAAAACATTTATCAAGGATCAGTTTCTACCAGAATCAAACAAGTCTGTGCATCCAGATAAGCTGGGTTTTTCCCTgaaaattcagttttattttcaaatttataAAAGGGGTAAGTGCGCTAGTTGGTGTGCTACACTAAATGGTATAGTTGAGTGTACATTGACCTTTGTATGTCCAGtgtttgtattcagttttgtgtttataaCTACATAGTTGTAGTTGTAGAGGTGGCTAGGACCTTCAATCTATACATATCTGGCAAAGGAACAAGGTGTTTGAGTGGCTTCCACTTGTATCTTACCATTCTTAAATTATGTTGTGTGGATTTTAGGGTTGGTTAATATAATTAAGATATCATATGCATGGtttgtttcaataaaaaaaaaagtgca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K04565 SOD1; superoxide dismutase, Cu-Zn family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13572 lncRNA downstream 729383 6222863 ~ 6223229 (-) True G10956
TU13568 lncRNA downstream 1062696 5889588 ~ 5889916 (-) True G10952
TU13556 lncRNA downstream 1110908 5841477 ~ 5841704 (-) True G10940
TU13551 lncRNA downstream 1201278 5750918 ~ 5751334 (-) True G10935
TU13550 lncRNA downstream 1206045 5746336 ~ 5746567 (-) True G10934
TU13884 lncRNA upstream 660732 7619698 ~ 7619997 (-) True G11215
TU13885 lncRNA upstream 661674 7620640 ~ 7620853 (-) True G11216
TU13891 lncRNA upstream 721945 7680911 ~ 7688962 (-) True AMCG00016110
TU13918 lncRNA upstream 913451 7872417 ~ 7872769 (-) True G11243
TU13922 lncRNA upstream 1008105 7967071 ~ 7967305 (-) True G11247
AMCG00016085 mRNA downstream 54736 6875446 ~ 6897876 (-) True AMCG00016085
AMCG00016082 mRNA downstream 91230 6847806 ~ 6861382 (-) True AMCG00016082
AMCG00016090 mRNA downstream 119021 6831122 ~ 6833591 (-) True AMCG00016090
AMCG00016089 mRNA downstream 123090 6816726 ~ 6829522 (-) True AMCG00016089
AMCG00016083 mRNA downstream 165103 6783537 ~ 6787509 (-) True AMCG00016083
AMCG00016094 mRNA upstream 1081 6960047 ~ 6989921 (-) True AMCG00016094
AMCG00016093 mRNA upstream 56996 7015962 ~ 7020428 (-) True AMCG00016093
AMCG00016095 mRNA upstream 66136 7025102 ~ 7045994 (-) True AMCG00016095
AMCG00016096 mRNA upstream 94740 7053706 ~ 7056775 (-) True AMCG00016096
AMCG00016097 mRNA upstream 102851 7061817 ~ 7097527 (-) True AMCG00016097
TU13237 other downstream 3032188 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 3413419 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 3917429 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 4241927 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 1232580 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 3887868 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 3887965 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 5364195 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 5903133 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile