RNA id: AMCG00016089


Basic Information

Item Value
RNA id AMCG00016089
length 1149
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00016089
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6816726 ~ 6829522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCTGCTCTGTTGCACTGAGCTGCTTGGGACTGCTGATAGCCATAATGGGCATGCGTTGCACATCCTGTATCCAGAACAATGAGCGTGGCAAGAGTATAGTGCTGATAATTGCTGGCTGGATGATCATTCTCGCTTGTATATGCGTCATTATACCCGTGTCCTGGACTGGCCACACAATCATCACAGACTTCTACAATCCGCTGCTGCTGGACGCTCAGAGACGGGAGCTGGGCGAGGCGCTGTACATTGGGTGGGTGACTTCTGCTTTTCTGTTCGCGGGAGGACTTATATTTGCGTGCCGCCATGTGCCTAGTGATAAATATTTGGATAAGAGGCTGATGTATCCCAGAAACACACCGTTAGTTGAGTACCAGCCTCCCATGTTACAACGCTATCCCTCAAGCATACGCAGCAGAACCGACTATCATCGCACACCTCCCAGTGCCCCCGTGGTCGAGTCCACTCCGCCTCCGGTTCCCCCAGTATCTCTGATTGTCCCTAAACCGCAAGAGCAAAGCGCGGCACTGCAGCACGACCACGGAGAGTCGACTCTTGCTGCGATTAAGGACATGCGCACAACCATAATCGGTTTCGACTACAGGGTTCGGAATCTGGAATCTGTGAAAACGCATACAGCCCCCTGGGCGCCGCTCCGCTCTGCACCCGTCCTCACGTCATACACACTTTCATCTCCGGTTCCTGCTCCCTCTACTGGATCTCCCTTCACCCCACCTGCTGCCGCTGTGCCCGATGGGCTGCGCAGACAGATCGTCATACTTTTGGTTACTGGCTTCGATGTGAAGGACTCTGTGGTCAGCGGCTACGTGCCGGGAGAGATCGCCTGCTGTGCCGACGAAGCCACACAGACGGAGACCCTGAATGAGGTTCCCGAGGCCGAGGGCTCTGCAAGGCACCTCAGCTGGAGACAGAAGGAGGAAAGGAGACGCCAGGAGGCTCAAGTCTCTGATCTGCAGAGCCAGCTGGAGAAGCAGATCAATTCAGAGGTGGCCGAACTGCAGAAGAGGTGCGATACATCCCAGCAGCCCTGCGCGCCCTTGAGCATCAGCGGGACACTGCAGTATGAAGCGGATCCTCTGAGGGACGCCCTGATGGAGGCGGAAGAGATGCAGGCCGAGGCACACTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13572 lncRNA downstream 593497 6222863 ~ 6223229 (-) True G10956
TU13568 lncRNA downstream 926810 5889588 ~ 5889916 (-) True G10952
TU13556 lncRNA downstream 975022 5841477 ~ 5841704 (-) True G10940
TU13551 lncRNA downstream 1065392 5750918 ~ 5751334 (-) True G10935
TU13550 lncRNA downstream 1070159 5746336 ~ 5746567 (-) True G10934
TU13884 lncRNA upstream 790176 7619698 ~ 7619997 (-) True G11215
TU13885 lncRNA upstream 791118 7620640 ~ 7620853 (-) True G11216
TU13891 lncRNA upstream 851389 7680911 ~ 7688962 (-) True AMCG00016110
TU13918 lncRNA upstream 1042895 7872417 ~ 7872769 (-) True G11243
TU13922 lncRNA upstream 1137549 7967071 ~ 7967305 (-) True G11247
AMCG00016083 mRNA downstream 29217 6783537 ~ 6787509 (-) True AMCG00016083
AMCG00016087 mRNA downstream 43632 6735946 ~ 6773094 (-) True AMCG00016087
AMCG00016084 mRNA downstream 147714 6647307 ~ 6669012 (-) True AMCG00016084
AMCG00016081 mRNA downstream 176189 6637332 ~ 6640537 (-) True AMCG00016081
AMCG00016086 mRNA downstream 180029 6614705 ~ 6636697 (-) True AMCG00016086
AMCG00016090 mRNA upstream 1600 6831122 ~ 6833591 (-) True AMCG00016090
AMCG00016082 mRNA upstream 18284 6847806 ~ 6861382 (-) True AMCG00016082
AMCG00016085 mRNA upstream 45924 6875446 ~ 6897876 (-) True AMCG00016085
AMCG00016088 mRNA upstream 123090 6952612 ~ 6958966 (-) True AMCG00016088
AMCG00016094 mRNA upstream 130525 6960047 ~ 6989921 (-) True AMCG00016094
TU13237 other downstream 2896302 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 3277533 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 3781543 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 4106041 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 1362024 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 4017312 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 4017409 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 5493639 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 6032577 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile