RNA id: AMCG00016092


Basic Information

Item Value
RNA id AMCG00016092
length 4335
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00016092
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6993996 ~ 7008772 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAGCCCTCACAGAATGAGGCTTTCTGCTCGCAAAAGCAGCGCCTCAGTGTCGCCCGGCGGTCGCGCAAAGAGCAGCTTAACGCGCAAGGAGAGCGTTGCGTTCTTTGGGATGTTGCGCTGGCAGAAACACGCAAACAACCTGGAGTGAACTGCGCTATTCAATGATGAACTGCAGTCggaccctttttatttttgtctcaaATATCAGgcgcatgtatgtatgtactgaaTTTGGAAAACTCTGAATGGTGCCTTGGTTTAGAGTGTGAAGCCTGGATTGAACAGGTGGTGAGGATCGCACAGCGCGCAGAGGATTGTGCATCAGCGATAGTGTGCAaactggtttttttttttttcttcagatgcCCCTTGCTGACAGTGCTTATCCCTCCTGAGCTCAAAGGCGGCTGCGGCTTTCCCGCAGTGTTAGCGCACTGAAGCAGGATGCCCGCGGCTGTCAGGGACATGCTGCACGACGCGCCCCGTCTCTTTGGGCTGAAGACCCCCTGTATTCCCATCGAGACGAGCTTCCCCTCTTTCTCTGGGGGTCCTTCCAGGGACAGTCTGCGCACTTTCTACCATACCAAAAGAGTGGGGAATTACCTGATCGGAAGGAAGCTGGGAGAGGGCTCCTTCGCCAAAGTTAGAGAGGGGCTGCATGTGATGGTCGGGGAAAAGGTGGCAGTGAAAGTCATCGACAAGAGGAAAGCCAAGAAGGACTCCTACGTGACGAAGAATCTGAGGCGAGAGGGCCAGATCCAGCAGATGATTCGCCACCCCAACATCACGCAGCTCCTGGACATTTTAGAAACAGAGAACAGCTACTACCTGGTGATGGAGCTGTGCCCCGGGGGGAACCTGATGCACAGGATCTATGAGAAGAAGAGGCTGGATGAAAGCGAAGCCCAGAAGTATATCAGGCAGCTGGTCATGGCTGTGGAGCACTTGCATCGGGCTGGCGTGGTCCACAGagACCTGAAGATAGAAAACCTTTTGCTGGATGAAGATGACAACATCAAACTCATAGACTTTGGCCTGAGTAACTGTGCTGGGATTTTGGGTTACTCCGATCCTTTCAGTACCCAGTGTGGGAGTCCTGCATATGCCGCCCCTGAACTTCTGTCCAGGAAGAAGTATGGTCCCAAAGTGGATGTCTGGTCCATAGGTGTGAACATGTATGCCATGCTGACTGGAACCCTGCCCTTCACAGTGGAGCCTTTCAGTCTCAGAGCCATGCACCAGAAGATGGTCGATAAGGAAATGAACCCACTGCCCTCTCAGCTCTCAGCAGCTGCAGTCAACATGTTAAGAAGTCTGCTGGAACCAGACCCAACCAAGAGGCCAAATATCCATCAAGTCATGACTGACCCCTGGCTTAGACTTGGAAGCTCTCAATGTGGAAGTCCTTATCTAAACAGGATACACATTAAGGAGATCAACCACAACGTGCTGCTGCACATGACCGAGCGGCTGGGGTTCAAGCACAGCGAGGTCCTCAGTGCTGTGCTGACTAACAGGGCCTGTCACACCCTGGCCGTCTATTTCCTCCTGAACAACAAGATGAAGAGGCTGTCCAGGGAATTCCATGAGAAGCATTTCatggaaaaagagagaaaaacagaagtcTTCCAAACTCATTGGATTAAAAGAATCGAGAAGTTGGCTCTTCCACAAAAACAGACTCCTTCTTATCTTGCCCCGAACAAGGGCCTgcagaaggaaaagaaacagaaagccATTCAGCTGGAGAGAGGCCTGCTCCGCACCGCCCCCTGTGGCAACGACTCGAAGCTCAGCGCTGGTGGAAGTGTGGCGTCGTCTTCCTTGGAATACCTGGAGATGCACCCTCTTTATCCTCGCACTCCCCAGCCCCTACGGCGCCTTGAGGCACACCAGCAGGGTGGCGTCCCTTCAGGCAAAGAAAACCAGGATGCCGCTGCCACCGCCCACGCTGGGAATTCTTGGGACTCCTCTGCTCGAGAGTTGGACCGCACTCGGCCAGCACCACGTTTCAAATTCACAAACTTCCCTTATTCATACAGGGGTGCTGCGGACCACCCCCAGGCCCCTGCCTTCCAACCAAACAGTCCTTACCTGAAGAAAGCCACCATCCCCAGCCCACCAGCTATCCCCACACCGGACAAGACAAGCCCTTCAAAGTCGGACTGGTCCTCATCGGCCTCCACCACTTCGCCCAGCACAGCGAGCACCGAGCTGGAGAGCCCCAAGAACCGAGGGAAGTTCCCCACGATGGGTATTGGGCAGATGCTGAAGAAAAGGAATCACAACCTTAGTTGCAAAGCTGATCCTCCCCTGGAAATAAACTCTGCCGCGGCCCTCCCGTCATACCACATGCAGACTCTCATCTGTGCTTCCGGGGCCCTCAAAACATTGTGCTGACAGACTGCCGCAGAAAACCGTTTAAatcatctttaaatatataacaacaaGGACAGACCCTGCTCACCACAAAATGCTGTGACTTATTATTTAACACTGGCTTGGGTTTTATGTTGTACTCCAAAATAGCTGTGGGACACGCAACACCAAAACcgacaaccacaacaaaaacaagcacgGACAAACCAAATGAGTTGATTTTGTGTGTTGGGACTTTGTGCTTTGATGTACCATGTATTTCCTGTGCTGAATTGcttacatgtttgtgtgtgaaagagcTCAGCACAAATAGCTTTACGTCTGtccatatttctatttttgataaCTAATTTCATCCTTCTTTGATATACATATGCCACAGAACTAAATATACTCAATTTTGGAGACTTTACATGTGCTAGGATTTCCAGCTTGGTCCACACTTTCGCAAAATGTGGAGACACGTTGTTGTTTATGTTCCCCCTAAACTAAACATTATTCAACACAAAATGAGTGTCACACCTACACTAATTGAATcttgtattaaatgtacaagGAAAAGATTGACTTTGAGTTCgaattgtgcttgtttttttcatttatttgaatgtttcgTTTAGTTTGAACATTAGTATATCTATTCATTTGTTCGTTGCGTTAAACACCTAATACTGCTAGGTGGTTCAATCAGAGCATTGATAGGATTCTCCACAGTTGTAAAGTAAAACATGCAACCAATCATCTTACCAGGTTACAGAATACAACAGGGGTAGATATGATTTTATAGGCTCATGTGGCCAGACAACAGCCCAAATGTGCATTAGATTGAAAATGAGGAGATTCCAGACTTCTGACTCATTGAGAAATAGCCTGCATTTTGACACTAGACAGGTAACCTGATCTACAATGTACAAATCTCCTAAATACCAGAATTTCAATTTTGGAGGGAATGGGTGAATCCGAAAAcatatgttaatttattaaacaatgttaCTGCTTTGCTCTTGAAATCTTCAAATCAGTGATCTGAGTCTTTTCGCATAGAAGTGTGCAAATACTATatctgtatttttccattttagatCAATTCTTCTATTTGACAACCTTTTCAAAACGTTACTCAAGCACGCCACTGCCCTTCATCTTTTCCAGAGAGGATTCCTTtgctgaattaaacaaatctgttcaCCCAAGTATATACCAAGAGCAGAACTGTAAAAACTCAGAAGTAGTATTAGAGCTTGAGACTGATCTGACATGTGTTTGAATGCCTAATAGGATcaaaagccattttaaatgaatgcacagtcttaaaatgttattgatataGAGGGTTTCTTccggtttatttttttccaggcaTCAATTTTATAAAAgccttaaatatatatgtatatatattgaagaGAGCACATTTTCAGAAACTCCAAGCTATTAATGGGTTATCTTCTGCATGCTTTTTGTATATTATGTAAAGATGTGTATTTATGTCTGATTGTATCTGTAAATCTGTCAGCAGTCAATCCCTTTCCGTTAAAGTATCACTACACTACCTGAATATATGTAGCAATATGTAGAGTTCAAATTTGAAAGCAAGAGGAAGCCAATCTGGCCCAACTTGACATTTTTGCCTCAGTTGCTGTGATTTCATCAATGAATCAgctttacaaattaattttctctttaATAAAACTATATTCATTTACTTCCTCATATACAACTATCTGTTCTCTGATGGGGCCGCATTATTTTTTGTCTATGAAATTTACATGAGCTGTAGATATGGaccatcatttttttttttaattattttcatttattttcttgtgtccCCCCCCCTCAGTGTTCAGCTGACCTTTCTAGCAAAAGACAAATAGTACACTGGGACTTTTTTTACGGTGCTGCAAAtgtgtacaaatatttttatgTCATGAAACCcttaaagaataaata

Function

GO: NA

KEGG:

id description
K08797 HUNK; hormonally upregulated Neu-associated kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13714 lncRNA upstream 3096 6990649 ~ 6990900 (+) True G11069
TU13711 lncRNA upstream 3427 6990127 ~ 6990569 (+) True G11067
TU13694 lncRNA upstream 37391 6952613 ~ 6956605 (+) True G11052
TU13652 lncRNA upstream 249638 6735610 ~ 6744358 (+) True G11021
TU13555 lncRNA upstream 1152175 5841228 ~ 5841821 (+) True G10939
TU13726 lncRNA downstream 13375 7022147 ~ 7024706 (+) False AMCG00016091
TU13746 lncRNA downstream 45188 7053960 ~ 7055721 (+) True G11098
TU13786 lncRNA downstream 287299 7296071 ~ 7302042 (+) False AMCG00016103
TU13825 lncRNA downstream 463884 7472656 ~ 7478586 (+) False AMCG00016101
TU13830 lncRNA downstream 470834 7479606 ~ 7481030 (+) True G11168
AMCG00016078 mRNA upstream 293110 6690753 ~ 6700886 (+) True AMCG00016078
AMCG00016080 mRNA upstream 314959 6670306 ~ 6679037 (+) True AMCG00016080
AMCG00016079 mRNA upstream 335098 6641658 ~ 6658898 (+) False AMCG00016079
AMCG00016077 mRNA upstream 506479 6372399 ~ 6487517 (+) True AMCG00016077
AMCG00016076 mRNA upstream 1885004 5048208 ~ 5108992 (+) True AMCG00016076
AMCG00016091 mRNA downstream 13405 7022177 ~ 7024851 (+) True AMCG00016091
AMCG00016104 mRNA downstream 38348 7047120 ~ 7053548 (+) True AMCG00016104
AMCG00016098 mRNA downstream 93429 7102201 ~ 7110849 (+) True AMCG00016098
AMCG00016102 mRNA downstream 178413 7187185 ~ 7190116 (+) True AMCG00016102
AMCG00016103 mRNA downstream 261083 7269855 ~ 7302034 (+) True AMCG00016103
TU13604 other upstream 328448 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 332328 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 2565937 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 4232277 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 2059509 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 2090648 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 2214640 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 2550692 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 2590043 9598815 ~ 9599156 (+) True G11660

Expression Profile