RNA id: AMCG00016093


Basic Information

Item Value
RNA id AMCG00016093
length 1347
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00016093
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7015962 ~ 7020428 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGCAGTCACAACGCGCAGGCCCGGCTCTGACGCACTTCCGCTTCCCgctctgttttgtatttcaaaccCGATGGCGGGGCTTGGTATCGGAGCCGGGAAAGCGCTTTCAGCGAGGATTGACCGCAGAATGGACGATGACTCGGCCACGATGTTGAAGGAGTGTAACGcaggcgaggaggaggaggaagaggaggacgaAGATGACAATGTGCCCCCGGTGGTGTTTCTGTGCGTGAAGTGCAAGGTCGCTCTCGGAGACTCGTTGGCCTGGGTGGGCAGCGAGGACGAGCAGAATCTGATCCTGCTGACGCGTGCCACTGACAACGTGTGTGTGGGCAATGAGCACTTTGTCTCCAGGATGCCCAAGGAAAGTGGCTGCCTCcttttaaatctgtattgtCGTGGCTGCTCTCTTCAGCTGGGCAAGATGTACACCTCTACCCCCAAGAATTTAGACTACAAGAGATCACTCTTCTGCCTGAGCATTGAACAAGTGGAAAGCTATGTGTTAGGCTCCACCACACAGAAGATTTGCCCAGAGGATGAGGATGAACCAGTAACTCTGGAGCACAGAGTGTATTTAGAGCATGAGATTGAAAAGGTCAAGGCTGTTGTGGTTTCAGTGGAACAAAGATTGTCAGAAATCGAATCAAAACTCCTTAAAAAAGCACAGTAATCACAGATTCATCTTATTTTCCACTAAATAATTGTGTACCCCCTCATGGGTTAAACCAGTCTAGCTCGGAACCAGTGCTGTTATCACAAAAGGCTTTAACTGGGTGAGCTATTCAGGAGTTCtgcagatgtatttatatatatatatatatatattgtttgtatcACAGTTGTATATCAAGTTTGTAATCtctgttttgttatgttttacagtatttgtttgATATCCAAACAGTTGATcctcagaaatgtaaatatttttttttttcctctgctgtCAGAGGCACAATTAGAATATATACCTGTCGTGCCTTTTTGGCCTTTGTTGTAATAAAACGCCGCCGCAGTATTTGGATGTGTGCTGCTGTAGTTTTTCTATAATGTAGGGTCCAGTATCATCCCAGTCTTTATCCTAGTGCACAGCTAGCTGCAGAGATTGTATGCCGTTTTATTGATTTGTCTTTTGAGGTGAATGGGGTTCAGTTTGTTAAAGGTTTGtggtaaaacaacaaaaggtaAATGAATATGGGGATcctaaaatgtttaaatcaataaatggcAGGGTtcttctaaaaatgtaatttgtagtattttctttatctgtaaAAAAGATTCTGTTTgtgatgtgaaaataaatgtaattcacagtgaaataaatgttattcccata

Function

GO: NA

KEGG:

id description
K11564 MIS18, FASP1; kinetochore protein Mis18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13572 lncRNA downstream 792733 6222863 ~ 6223229 (-) True G10956
TU13568 lncRNA downstream 1126046 5889588 ~ 5889916 (-) True G10952
TU13556 lncRNA downstream 1174258 5841477 ~ 5841704 (-) True G10940
TU13551 lncRNA downstream 1264628 5750918 ~ 5751334 (-) True G10935
TU13550 lncRNA downstream 1269395 5746336 ~ 5746567 (-) True G10934
TU13884 lncRNA upstream 599270 7619698 ~ 7619997 (-) True G11215
TU13885 lncRNA upstream 600212 7620640 ~ 7620853 (-) True G11216
TU13891 lncRNA upstream 660483 7680911 ~ 7688962 (-) True AMCG00016110
TU13918 lncRNA upstream 851989 7872417 ~ 7872769 (-) True G11243
TU13922 lncRNA upstream 946643 7967071 ~ 7967305 (-) True G11247
AMCG00016094 mRNA downstream 26041 6960047 ~ 6989921 (-) True AMCG00016094
AMCG00016088 mRNA downstream 56996 6952612 ~ 6958966 (-) True AMCG00016088
AMCG00016085 mRNA downstream 118086 6875446 ~ 6897876 (-) True AMCG00016085
AMCG00016082 mRNA downstream 154580 6847806 ~ 6861382 (-) True AMCG00016082
AMCG00016090 mRNA downstream 182371 6831122 ~ 6833591 (-) True AMCG00016090
AMCG00016095 mRNA upstream 4674 7025102 ~ 7045994 (-) True AMCG00016095
AMCG00016096 mRNA upstream 33278 7053706 ~ 7056775 (-) True AMCG00016096
AMCG00016097 mRNA upstream 41389 7061817 ~ 7097527 (-) True AMCG00016097
AMCG00016106 mRNA upstream 453423 7473851 ~ 7508095 (-) True AMCG00016106
AMCG00016105 mRNA upstream 499738 7520166 ~ 7526254 (-) True AMCG00016105
TU13237 other downstream 3095538 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 3476769 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 3980779 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 4305277 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 1171118 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 3826406 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 3826503 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 5302733 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 5841671 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile