RNA id: AMCG00016096


Basic Information

Item Value
RNA id AMCG00016096
length 1276
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00016096
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7053706 ~ 7056775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGAATGCATAGACAGCTGTATAAGTCCACTTCGGTATCTGAAATGTGAAACGCAGCCCCAGCCTGTACTGATTGTGttgagtgtgtggggggggcgcaGCCATGGTGCAGCTGCACGTCAAGCGCGGCGAGGAGAGCCAGTTTCTGTTCTGCACGACCACCGGCGCGGCGCTGGACGCCATCATTCAACAGGTGACGGACATCTATAATGGCAGGCTGAAGGTGGACAGGATTTGTTCAgAAATGGAAGAACTGGCCCAGCATGGCGTCACCCTTCCCCCGAACATGCAAGGATTGACAGACGAACAGATCGAGGAACTAAAGCTGAGAGACGAGTGGGGGGAGAAATGCATCCCGTGTGGAGGAGCCGAGTTCAAAAAAGATGAAATTGGAAGGAGGAATGGTCATGCTCccaatgaaaaaatgaagcaagttttgaaaaaaactaTCGAAGAAGCTAAATCATTAATTTCTAagGTCCAGGCCAACGTGTGTCTCACTTTGGACATGGTGACAGAAGCTCTTGACCAACTCCGGGGTGCTGTTACAATAGTATATCCGATGGGGCTTCCTCCACACGACCCAATCAGGATGGAGTTTGAAAATCAAGAAGACCTGTCTGGAACACAGGCGTCCTTGCAGGTGATTGCAGAAGAAGAGGCGCAGCTGTGGTGGGCAGCAAAGGAGTTACAAAGAGGGAAGAAACTACAGGAATATGTGGGGAGAAATGAGAAAACGAAAATAGTGGTAAAGATACAAAAGAAACTGGAAGAAGCCGATGATGATACCCACCTGAACTCTGATTGGTCTGACAGACAGGCACTGAAGAGGCAATTTCAGGGTCTCACTAATATCAAATGGGGACCTAGATGAACTCAATTGCAACCGATGGTGTCTTATCTCTGAAATTTGGAGTCATTGTGATAAGTTCTTTGCAACTCTGTTACCATACATAAGTCTTTTTTAACCTCCTCTCAAAGTGACCAATGCTAGCTGTGAAACCTCTTATTTAACATTTCTTGCACACTTAgaaataaagtttaaattatataagtTGAGTGCCTTCATTCACTCTTATTTCACTCATTGTTTTTTATCATTGAGGATATTGCTGCTACCTGTGAATCTGAGTGATAACGGTGCTAATGTGGTAGCATATGTGCATATGTTTGCATATAAATTCCATTAACCATCCACCATCAAATTCTAGAATTTATATCAAGCTTCCTTTCAATATCAGAAATCCTCAGTTTCCCATTGAATAGAGGCCCCAAG

Function

GO: NA

KEGG:

id description
K24229 CFAP298; cilia- and flagella-associated protein 298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13572 lncRNA downstream 830477 6222863 ~ 6223229 (-) True G10956
TU13568 lncRNA downstream 1163790 5889588 ~ 5889916 (-) True G10952
TU13556 lncRNA downstream 1212002 5841477 ~ 5841704 (-) True G10940
TU13551 lncRNA downstream 1302372 5750918 ~ 5751334 (-) True G10935
TU13550 lncRNA downstream 1307139 5746336 ~ 5746567 (-) True G10934
TU13884 lncRNA upstream 562923 7619698 ~ 7619997 (-) True G11215
TU13885 lncRNA upstream 563865 7620640 ~ 7620853 (-) True G11216
TU13891 lncRNA upstream 624136 7680911 ~ 7688962 (-) True AMCG00016110
TU13918 lncRNA upstream 815642 7872417 ~ 7872769 (-) True G11243
TU13922 lncRNA upstream 910296 7967071 ~ 7967305 (-) True G11247
AMCG00016095 mRNA downstream 7712 7025102 ~ 7045994 (-) True AMCG00016095
AMCG00016093 mRNA downstream 33278 7015962 ~ 7020428 (-) True AMCG00016093
AMCG00016094 mRNA downstream 63785 6960047 ~ 6989921 (-) True AMCG00016094
AMCG00016088 mRNA downstream 94740 6952612 ~ 6958966 (-) True AMCG00016088
AMCG00016085 mRNA downstream 155830 6875446 ~ 6897876 (-) True AMCG00016085
AMCG00016097 mRNA upstream 5042 7061817 ~ 7097527 (-) True AMCG00016097
AMCG00016106 mRNA upstream 417076 7473851 ~ 7508095 (-) True AMCG00016106
AMCG00016105 mRNA upstream 463391 7520166 ~ 7526254 (-) True AMCG00016105
AMCG00016108 mRNA upstream 473136 7529911 ~ 7574480 (-) True AMCG00016108
AMCG00016107 mRNA upstream 551732 7608507 ~ 7616298 (-) True AMCG00016107
TU13237 other downstream 3133282 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 3514513 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 4018523 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 4343021 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 1134771 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 3790059 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 3790156 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 5266386 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 5805324 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile