RNA id: TU13825


Basic Information

Item Value
RNA id TU13825
length 3412
lncRNA type sense_over
GC content 0.38
exon number 3
gene id AMCG00016101
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7446450 ~ 7478586 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGAAGCCCCTGTGTTCTACATGACCTGAGTGAAGAAAAAGGTTGAGATTTGCTCTTCTCCCTTCTCATGGATTTTAAAACCAGAGGAATAATTTCAAAACATCACCAAATCCTTTAGTAGTGTAACAGTTAGTTGTTCATTATTTGTTAACTGAATGTGTGAGCTATCAAAGCAACCATGGAACATTTATGCACGGAAATTTCACGTCAAATATCTGAAAATTTAAACCCCACTCGTACAAAACTATTCCTTGGAATTCATGGATTGTAGAGACTaaccagaataataataatagtaaactCCTAGTAGTGGTTCATTGGGATCAAACCGTTTCCACTGAACGTTTTAAGACTGAAGTTATAATTCAAATTACTATCCCACAGGGAGGAAGAAAAATGTTAACCTCTTGCTTCAGTAGACAAGAACCTCAAAGGATTCCCGATCTGTTAGGACTGATGAGAGTGAATACAGTTTAATTCAGGAGGTGATTTGTTAAGAGTAAAGTGGAAGACAGCTTGGGTCAagattacagtgtgtgtgtgtgtacttgtaTGTGTTTCTCATTTATCGGGTACCTTTTTGCGATGAATCCTTTGACCTCCTTTTGTTTGTATGCAAGTCCCAACATTGTTTTGTGCTCTCTGTCAGGGTTATGCCTCAATAGAGACTTTCCTGTAGTGTGTGGGTATTCTACAGCTACTGCAACAAGTTAGGTCACTGTCCCACAGCCATTCGAAACGAACAACCTCCATGTTCACAAAAACCTGCTTTAGGCAAGAATACTTACACAGATGCCTCTGCAGTAATTACATGACTGGGGTGAATGAGGAAGGGGCCTGGGGAACATTTACTCTGCAGGGTACAATTTGGCTTAGGACTTCTTTGGACAGAGAACGAGGGAGAGaacttaaatgaaaaaaaaaaaaagtgtcagatATAGTTTTGTGTAAAAGCCAGAATGTGGATGGGTCCTAATACATAACACATACGATCTGTTATTCACATGGCAAACAAAATCTGTGGAAGTTTCCATGAAATATAAGAGCACCTATGATTATCTCTTCCCAGCCTTACAGATTTTTCTGCTCGGCAGCTATGGTAAGATGAAGTAACTGTGTTGTTTATACTGATGCCATAGCTTCCAATTCTATTGATAATCCTGACAACTAAATTTCCAGTACAGCATACATTTAGGGTCTCTGTGTACCCGTTAGGAGAAAGCTAGTTTGGAGACCCTGCGTACATTATTAAACTAGGTAGCAATAAGTAAAAAGCTAAGATAGTGGGCAGACATTTAGGTTTCCTTAAAAGTATTTCATGAACTGATTACTCTGTAACTAGAATTATCTGTGCAGGGTTATAGGATCTTCATACAGTGTTCGGCACTTTAGTTGAATTTGCACTCATGCCCCCACATAGTTTTTAGAGGAGGCATCTGTTCTCGAAATactgcaaaaatgtaaacttcTAAAGAGTTTGTTTGAGCCAGCATGTACTTTCACTTTGAGGAAAGAGTGATTTTGcaattttgatttttgattttattttcagaagattgttttcaaattcaCATTCCAGAATACCTTGGCTAAACATGCTAAAAGGCCTCTagttgcattatgctttgaaggGATAAGAAACATTTTGCATCCTGgtaagacaaataaataaaacaaaacaaaacaaaacaaaaatactttccCTTTTTCATCGTGAAGTCATATGGTCACCCTCGATGCCAGTTCCTCCAATGACTGAATGAATGTATACAGTACACTAGGGTTTGTATGTATCTCACCCACAGCCATAGAGTAGCTGTAGAATCCAGATGGTATAGCTATAGAGACCAGTACTGGTCTGTTGTTTTAGTAGCCTAATGTCGCTGTAACACTGAATAATTTACTCcttttactaaaaaaaaatgatgttatggggaaaaaaaaaaaaaaaaaaatgttttaaacacaaatgaaatGAGATTAAATGGGTTTATCTATTAAACATGGGTGCAATGTGTACTGTTCTCCCGTTTGTTTTTGGACACACTTTCATTTGGTATCAGCAAGGCCTTTTAAACCATGGGCTGGATCAATACTTTGACCCATCTGCTAATAGCAATCTGAACAACAGTACTCCACAAAtgcaggtttgtagttttctactAGTGGGTGGGtccaagtttttatttaatctcagcCCGTGTCTCATTTCTTCATCTGGACTGCACTGCAACTGAGATCCAGAAAACCCACCAGCCATAACATATTACTTCACCACTATACCTTTCCCCAAAAGCTGGGATCCAGTCTTAAGGAATCTCAATACACTATATTCTTTCTGAATAAGGTGCTTAATTTTAATGCACTGTTAACCAAAGCCACAATCCTGCTGTGTTACAGATTGGGCATTTTAGCTTGCAGTCGCCGCATAAAGGCTTATATTAACCAAAATATTGCGGTTATATCGCCATAGCAACCTTGGGACACTTGAATTTCAGAATAATTGAGAGAGAAACCTGCTTGTTTAAATGAAGAATTGAAGATCACAGAATTACTGATGGAGTAGCAGTGAAATGTTCTCCCGTCATAACTTTAATTCAATCAATTGAagtctttacagttttctccaTGCTAATTCAGTAGTcaatattgattttatacatGTACTTTTTTCCTTTAGCCAGCAAATATCTTTTAATTCACTCCAACAGTCCAGTGTAACTGAAGCCACACTCCATAAATTAAATGGCACTGGCTTAAGACCTAAAGTTCCTTTTTATGTTAGCCAACTCCTAATTCTATACATctggaaaaaacatgtattgatttaaagttTTGCTTGTTATCGCCCTTTTACTTTAAAGCACATTGCTCCAGTCCGTAATTCTGCATGAAGTCGTGGAGCAGTTTGCATGCTTTCCGGCTTCGCGTTGCCCGGCATTTTGTCTCTTCAGGAATCTGCTCGACCCACACCTCGTGATTGAGGAAGTACTGTATGTTCCTTTAGAATCGGTAGTATCTGTACTACTGAAGTCTTTTCCCATCACTAGATACTTCTTATCCGGTTTCATTGAAAACTCACAGGACTGTCGTTTTATTAGGGAGCGGAAAGTGTTCCCTGTTAGGAGTGCTTCATCCTTAcctgtcaaaTAATGTGCAGTGTTTGGGTAACGTCCACAGCATAGTAATCAAAGACTCCATCTTGAGTTGTGTTGAGCACCTTGATAACGTACGCTGTTTCAAAAGATGTAACAGCATTACAGACAATAAGACGTTAGGAATTAGATGGTAACCCAGAAATCTTGATGATTGCCTCACCATAATCCACAATAGGAGAGAAGCAGGCAAAACTGAAGCGGGTGTTGTCGGTCATCATCTTACTAAAcgttgattttattttggggcAGCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13786 lncRNA upstream 170614 7296071 ~ 7302042 (+) False AMCG00016103
TU13746 lncRNA upstream 416935 7053960 ~ 7055721 (+) True G11098
TU13726 lncRNA upstream 447950 7022147 ~ 7024706 (+) False AMCG00016091
TU13714 lncRNA upstream 481756 6990649 ~ 6990900 (+) True G11069
TU13711 lncRNA upstream 482087 6990127 ~ 6990569 (+) True G11067
TU13830 lncRNA downstream 1020 7479606 ~ 7481030 (+) True G11168
TU13858 lncRNA downstream 32249 7510835 ~ 7511206 (+) True G11195
TU13861 lncRNA downstream 41612 7520198 ~ 7521580 (+) True G11197
TU13871 lncRNA downstream 48461 7527047 ~ 7597325 (+) True G11202
TU13879 lncRNA downstream 142276 7620862 ~ 7621557 (+) True G11210
AMCG00016100 mRNA upstream 54178 7403724 ~ 7418478 (+) True AMCG00016100
AMCG00016099 mRNA upstream 76397 7366296 ~ 7396259 (+) True AMCG00016099
AMCG00016103 mRNA upstream 170622 7269855 ~ 7302034 (+) True AMCG00016103
AMCG00016102 mRNA upstream 282540 7187185 ~ 7190116 (+) True AMCG00016102
AMCG00016098 mRNA upstream 361807 7102201 ~ 7110849 (+) True AMCG00016098
AMCG00016109 mRNA downstream 318339 7796925 ~ 7812179 (+) True AMCG00016109
AMCG00016115 mRNA downstream 368775 7847361 ~ 7871509 (+) True AMCG00016115
AMCG00016116 mRNA downstream 535233 8013819 ~ 8030218 (+) True AMCG00016116
AMCG00016117 mRNA downstream 556317 8034903 ~ 8044945 (+) True AMCG00016117
AMCG00016112 mRNA downstream 570206 8048792 ~ 8051720 (+) True AMCG00016112
TU13604 other upstream 807108 6664086 ~ 6665548 (+) True G10981
TU13602 other upstream 810988 6654712 ~ 6661668 (+) True AMCG00016079
TU13312 other upstream 3044597 4427146 ~ 4428059 (+) True G10739
TU12971 other upstream 4710937 2759347 ~ 2761719 (+) False AMCG00016030
TU14219 other downstream 1589695 9068281 ~ 9072022 (+) False AMCG00016136
TU14242 other downstream 1620834 9099420 ~ 9100036 (+) True G11509
TU14288 other downstream 1744826 9223412 ~ 9226245 (+) True G11545
TU14381 other downstream 2080878 9559464 ~ 9591649 (+) True AMCG00016159
TU14432 other downstream 2120229 9598815 ~ 9599156 (+) True G11660

Expression Profile